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  5. Pp3c10_20240V3.1

Pp3c10_20240V3.1


Description : Ribosomal L38e protein family


Gene families : OG0004269 (Archaeplastida) Phylogenetic Tree(s): OG0004269_tree ,
OG_05_0004744 (LandPlants) Phylogenetic Tree(s): OG_05_0004744_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c10_20240V3.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AT2G43460 No alias Ribosomal L38e protein family 0.09 Archaeplastida
AT3G59540 No alias Ribosomal L38e protein family 0.09 Archaeplastida
Cpa|evm.model.tig00021719.6 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
Cre07.g325746 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.35 Archaeplastida
GSVIVT01010854001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.26 Archaeplastida
GSVIVT01019051001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.3 Archaeplastida
Gb_16529 No alias component RPL38 of LSU proteome component 0.24 Archaeplastida
Gb_29252 No alias component RPL38 of LSU proteome component 0.13 Archaeplastida
LOC_Os11g24610.1 No alias component RPL38 of LSU proteome component 0.04 Archaeplastida
MA_20588g0010 No alias component RPL38 of LSU proteome component 0.28 Archaeplastida
Mp7g14520.1 No alias component RPL38 of LSU proteome component 0.02 Archaeplastida
Smo270247 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Solyc05g055640.4.1 No alias component RPL38 of LSU proteome component 0.07 Archaeplastida
Solyc11g008510.3.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e003730_P001 No alias no hits & (original description: none) 0.31 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002675 Ribosomal_L38e 2 67
No external refs found!