AT4G17230 (SCL13)


Aliases : SCL13

Description : SCARECROW-like 13


Gene families : OG0001538 (Archaeplastida) Phylogenetic Tree(s): OG0001538_tree ,
OG_05_0000997 (LandPlants) Phylogenetic Tree(s): OG_05_0000997_tree ,
OG_06_0001832 (SeedPlants) Phylogenetic Tree(s): OG_06_0001832_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G17230
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00136400 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.07 Archaeplastida
AMTR_s00088p00161000 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.09 Archaeplastida
AMTR_s00186p00018500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.05 Archaeplastida
GSVIVT01010007001 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.12 Archaeplastida
GSVIVT01037777001 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.12 Archaeplastida
Gb_40278 No alias transcription factor (GRAS) 0.07 Archaeplastida
LOC_Os07g36170.2 No alias transcription factor (GRAS) 0.1 Archaeplastida
LOC_Os07g39470.1 No alias transcription factor (GRAS) 0.13 Archaeplastida
MA_10432093g0010 No alias transcription factor (GRAS) 0.03 Archaeplastida
Solyc04g064550.1.1 No alias transcription factor (GRAS) 0.07 Archaeplastida
Solyc05g054170.4.1 No alias transcription factor (GRAS) 0.13 Archaeplastida
Solyc06g035620.3.1 No alias transcription factor (GRAS) 0.13 Archaeplastida
Solyc07g063940.2.1 No alias transcription factor (GRAS) 0.06 Archaeplastida
Solyc07g065270.1.1 No alias transcription factor (GRAS) 0.03 Archaeplastida
Solyc11g012510.3.1 No alias transcription factor (GRAS) 0.03 Archaeplastida
Solyc12g005340.3.1 No alias transcription factor (GRAS) 0.16 Archaeplastida
Zm00001e010646_P001 No alias transcription factor (GRAS) 0.09 Archaeplastida
Zm00001e031707_P001 No alias transcription factor (GRAS) 0.02 Archaeplastida
Zm00001e035384_P001 No alias transcription factor (GRAS) 0.08 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0002679 respiratory burst involved in defense response RCA Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated TAS Interproscan
BP GO:0006612 protein targeting to membrane RCA Interproscan
BP GO:0009693 ethylene biosynthetic process RCA Interproscan
BP GO:0009863 salicylic acid mediated signaling pathway RCA Interproscan
BP GO:0009867 jasmonic acid mediated signaling pathway RCA Interproscan
BP GO:0009873 ethylene-activated signaling pathway RCA Interproscan
BP GO:0010200 response to chitin IEP Interproscan
BP GO:0010200 response to chitin RCA Interproscan
BP GO:0010363 regulation of plant-type hypersensitive response RCA Interproscan
BP GO:0035556 intracellular signal transduction RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000165 MAPK cascade IEP Neighborhood
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Neighborhood
CC GO:0000322 storage vacuole IEP Neighborhood
CC GO:0000326 protein storage vacuole IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
BP GO:0002237 response to molecule of bacterial origin IEP Neighborhood
BP GO:0002683 negative regulation of immune system process IEP Neighborhood
BP GO:0002684 positive regulation of immune system process IEP Neighborhood
BP GO:0002697 regulation of immune effector process IEP Neighborhood
BP GO:0002831 regulation of response to biotic stimulus IEP Neighborhood
BP GO:0002832 negative regulation of response to biotic stimulus IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004564 beta-fructofuranosidase activity IEP Neighborhood
MF GO:0004575 sucrose alpha-glucosidase activity IEP Neighborhood
MF GO:0004683 calmodulin-dependent protein kinase activity IEP Neighborhood
MF GO:0004697 protein kinase C activity IEP Neighborhood
MF GO:0004698 calcium-dependent protein kinase C activity IEP Neighborhood
MF GO:0004709 MAP kinase kinase kinase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004722 protein serine/threonine phosphatase activity IEP Neighborhood
MF GO:0005310 dicarboxylic acid transmembrane transporter activity IEP Neighborhood
MF GO:0005342 organic acid transmembrane transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006862 nucleotide transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0006955 immune response IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
BP GO:0006972 hyperosmotic response IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0006984 ER-nucleus signaling pathway IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0007231 osmosensory signaling pathway IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0008195 phosphatidate phosphatase activity IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
MF GO:0008514 organic anion transmembrane transporter activity IEP Neighborhood
MF GO:0008728 GTP diphosphokinase activity IEP Neighborhood
MF GO:0008883 glutamyl-tRNA reductase activity IEP Neighborhood
BP GO:0009266 response to temperature stimulus IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
BP GO:0009414 response to water deprivation IEP Neighborhood
BP GO:0009415 response to water IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009595 detection of biotic stimulus IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
BP GO:0009611 response to wounding IEP Neighborhood
BP GO:0009612 response to mechanical stimulus IEP Neighborhood
BP GO:0009617 response to bacterium IEP Neighborhood
BP GO:0009620 response to fungus IEP Neighborhood
BP GO:0009626 plant-type hypersensitive response IEP Neighborhood
BP GO:0009627 systemic acquired resistance IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009642 response to light intensity IEP Neighborhood
BP GO:0009644 response to high light intensity IEP Neighborhood
BP GO:0009646 response to absence of light IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009694 jasmonic acid metabolic process IEP Neighborhood
BP GO:0009695 jasmonic acid biosynthetic process IEP Neighborhood
BP GO:0009696 salicylic acid metabolic process IEP Neighborhood
BP GO:0009697 salicylic acid biosynthetic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009723 response to ethylene IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009738 abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009753 response to jasmonic acid IEP Neighborhood
BP GO:0009759 indole glucosinolate biosynthetic process IEP Neighborhood
BP GO:0009814 defense response, incompatible interaction IEP Neighborhood
BP GO:0009816 defense response to bacterium, incompatible interaction IEP Neighborhood
BP GO:0009817 defense response to fungus, incompatible interaction IEP Neighborhood
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway IEP Neighborhood
BP GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0009901 anther dehiscence IEP Neighborhood
MF GO:0009931 calcium-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0009962 regulation of flavonoid biosynthetic process IEP Neighborhood
BP GO:0009963 positive regulation of flavonoid biosynthetic process IEP Neighborhood
BP GO:0009968 negative regulation of signal transduction IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010104 regulation of ethylene-activated signaling pathway IEP Neighborhood
BP GO:0010105 negative regulation of ethylene-activated signaling pathway IEP Neighborhood
BP GO:0010107 potassium ion import IEP Neighborhood
BP GO:0010117 photoprotection IEP Neighborhood
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP Neighborhood
BP GO:0010337 regulation of salicylic acid metabolic process IEP Neighborhood
BP GO:0010449 root meristem growth IEP Neighborhood
BP GO:0010648 negative regulation of cell communication IEP Neighborhood
MF GO:0010857 calcium-dependent protein kinase activity IEP Neighborhood
BP GO:0012501 programmed cell death IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015748 organophosphate ester transport IEP Neighborhood
BP GO:0015802 basic amino acid transport IEP Neighborhood
BP GO:0015804 neutral amino acid transport IEP Neighborhood
BP GO:0015824 proline transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016045 detection of bacterium IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016165 linoleate 13S-lipoxygenase activity IEP Neighborhood
MF GO:0016174 NAD(P)H oxidase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016778 diphosphotransferase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
BP GO:0017000 antibiotic biosynthetic process IEP Neighborhood
BP GO:0017001 antibiotic catabolic process IEP Neighborhood
MF GO:0017077 oxidative phosphorylation uncoupler activity IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0018958 phenol-containing compound metabolic process IEP Neighborhood
MF GO:0019187 beta-1,4-mannosyltransferase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
MF GO:0019900 kinase binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0022622 root system development IEP Neighborhood
BP GO:0023014 signal transduction by protein phosphorylation IEP Neighborhood
BP GO:0023057 negative regulation of signaling IEP Neighborhood
CC GO:0030173 integral component of Golgi membrane IEP Neighborhood
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
CC GO:0031228 intrinsic component of Golgi membrane IEP Neighborhood
BP GO:0031348 negative regulation of defense response IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
BP GO:0032101 regulation of response to external stimulus IEP Neighborhood
BP GO:0032102 negative regulation of response to external stimulus IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0032879 regulation of localization IEP Neighborhood
BP GO:0033037 polysaccharide localization IEP Neighborhood
MF GO:0033293 monocarboxylic acid binding IEP Neighborhood
BP GO:0033500 carbohydrate homeostasis IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0034050 host programmed cell death induced by symbiont IEP Neighborhood
BP GO:0034976 response to endoplasmic reticulum stress IEP Neighborhood
BP GO:0035264 multicellular organism growth IEP Neighborhood
BP GO:0035266 meristem growth IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042343 indole glucosinolate metabolic process IEP Neighborhood
BP GO:0042537 benzene-containing compound metabolic process IEP Neighborhood
BP GO:0042538 hyperosmotic salinity response IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0042742 defense response to bacterium IEP Neighborhood
BP GO:0042743 hydrogen peroxide metabolic process IEP Neighborhood
BP GO:0042744 hydrogen peroxide catabolic process IEP Neighborhood
BP GO:0043069 negative regulation of programmed cell death IEP Neighborhood
BP GO:0043090 amino acid import IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
BP GO:0043200 response to amino acid IEP Neighborhood
BP GO:0043207 response to external biotic stimulus IEP Neighborhood
CC GO:0043230 extracellular organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress IEP Neighborhood
BP GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress IEP Neighborhood
BP GO:0043620 regulation of DNA-templated transcription in response to stress IEP Neighborhood
BP GO:0043900 regulation of multi-organism process IEP Neighborhood
BP GO:0043901 negative regulation of multi-organism process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045087 innate immune response IEP Neighborhood
BP GO:0045824 negative regulation of innate immune response IEP Neighborhood
BP GO:0046189 phenol-containing compound biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048364 root development IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048584 positive regulation of response to stimulus IEP Neighborhood
BP GO:0048585 negative regulation of response to stimulus IEP Neighborhood
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Neighborhood
BP GO:0050688 regulation of defense response to virus IEP Neighborhood
BP GO:0050691 regulation of defense response to virus by host IEP Neighborhood
BP GO:0050777 negative regulation of immune response IEP Neighborhood
BP GO:0050778 positive regulation of immune response IEP Neighborhood
BP GO:0050832 defense response to fungus IEP Neighborhood
BP GO:0051090 regulation of DNA-binding transcription factor activity IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0051193 regulation of cofactor metabolic process IEP Neighborhood
BP GO:0051704 multi-organism process IEP Neighborhood
BP GO:0051707 response to other organism IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0051753 mannan synthase activity IEP Neighborhood
BP GO:0051865 protein autoubiquitination IEP Neighborhood
BP GO:0052031 modulation by symbiont of host defense response IEP Neighborhood
BP GO:0052173 response to defenses of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052200 response to host defenses IEP Neighborhood
BP GO:0052255 modulation by organism of defense response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052542 defense response by callose deposition IEP Neighborhood
BP GO:0052545 callose localization IEP Neighborhood
BP GO:0052552 modulation by organism of immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052553 modulation by symbiont of host immune response IEP Neighborhood
BP GO:0052555 positive regulation by organism of immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052556 positive regulation by symbiont of host immune response IEP Neighborhood
BP GO:0052558 induction by organism of immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052559 induction by symbiont of host immune response IEP Neighborhood
BP GO:0052564 response to immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052572 response to host immune response IEP Neighborhood
BP GO:0055062 phosphate ion homeostasis IEP Neighborhood
BP GO:0055083 monovalent inorganic anion homeostasis IEP Neighborhood
BP GO:0060548 negative regulation of cell death IEP Neighborhood
CC GO:0070062 extracellular exosome IEP Neighborhood
BP GO:0070297 regulation of phosphorelay signal transduction system IEP Neighborhood
BP GO:0070298 negative regulation of phosphorelay signal transduction system IEP Neighborhood
BP GO:0071323 cellular response to chitin IEP Neighborhood
BP GO:0071417 cellular response to organonitrogen compound IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0072505 divalent inorganic anion homeostasis IEP Neighborhood
BP GO:0072506 trivalent inorganic anion homeostasis IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
BP GO:0075136 response to host IEP Neighborhood
BP GO:0080086 stamen filament development IEP Neighborhood
BP GO:0080185 effector dependent induction by symbiont of host immune response IEP Neighborhood
MF GO:0090599 alpha-glucosidase activity IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
BP GO:0098542 defense response to other organism IEP Neighborhood
BP GO:0098543 detection of other organism IEP Neighborhood
BP GO:0098581 detection of external biotic stimulus IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1900424 regulation of defense response to bacterium IEP Neighborhood
BP GO:1900425 negative regulation of defense response to bacterium IEP Neighborhood
MF GO:1901149 salicylic acid binding IEP Neighborhood
BP GO:1902065 response to L-glutamate IEP Neighborhood
BP GO:1902477 regulation of defense response to bacterium, incompatible interaction IEP Neighborhood
BP GO:1902478 negative regulation of defense response to bacterium, incompatible interaction IEP Neighborhood
CC GO:1903561 extracellular vesicle IEP Neighborhood
BP GO:2000068 regulation of defense response to insect IEP Neighborhood
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005202 TF_GRAS 155 525
No external refs found!