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  5. Pp3c13_8840V3.1

Pp3c13_8840V3.1


Description : structural maintenance of chromosomes 2


Gene families : OG0004321 (Archaeplastida) Phylogenetic Tree(s): OG0004321_tree ,
OG_05_0004824 (LandPlants) Phylogenetic Tree(s): OG_05_0004824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_8840V3.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193070 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.09 Archaeplastida
AT3G47460 ATSMC2 Structural maintenance of chromosomes (SMC) family protein 0.06 Archaeplastida
AT5G62410 TTN3, ATSMC4,... structural maintenance of chromosomes 2 0.09 Archaeplastida
Cpa|evm.model.tig00000615.55 No alias Cell cycle.mitosis and meiosis.chromatin... 0.04 Archaeplastida
Cre02.g086650 No alias Cell cycle.mitosis and meiosis.chromatin... 0.02 Archaeplastida
GSVIVT01018715001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.07 Archaeplastida
Gb_17843 No alias component CAP-E2/SMC2 of condensin I/II complex 0.08 Archaeplastida
LOC_Os01g67740.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.05 Archaeplastida
MA_15346g0010 No alias component CAP-E2/SMC2 of condensin I/II complex 0.07 Archaeplastida
Mp1g04330.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.1 Archaeplastida
Smo137981 No alias Cell cycle.mitosis and meiosis.chromatin... 0.04 Archaeplastida
Solyc03g093250.2.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.08 Archaeplastida
Solyc03g093260.3.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.07 Archaeplastida
Zm00001e018930_P001 No alias component CAP-E2/SMC2 of condensin I/II complex 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0019825 oxygen binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!