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  5. AT1G02790

AT1G02790 (PGA4)


Aliases : PGA4

Description : polygalacturonase 4


Gene families : OG0000535 (Archaeplastida) Phylogenetic Tree(s): OG0000535_tree ,
OG_05_0000281 (LandPlants) Phylogenetic Tree(s): OG_05_0000281_tree ,
OG_06_0000124 (SeedPlants) Phylogenetic Tree(s): OG_06_0000124_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G02790
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270640 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.1 Archaeplastida
AMTR_s00019p00055210 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.05 Archaeplastida
AMTR_s00019p00057300 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.05 Archaeplastida
AMTR_s00019p00130680 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.05 Archaeplastida
GSVIVT01028044001 No alias Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01030017001 No alias Polygalacturonase OS=Gossypium hirsutum 0.05 Archaeplastida
GSVIVT01030023001 No alias Polygalacturonase OS=Gossypium hirsutum 0.08 Archaeplastida
GSVIVT01030030001 No alias Polygalacturonase OS=Gossypium hirsutum 0.03 Archaeplastida
GSVIVT01035103001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia 0.09 Archaeplastida
LOC_Os01g33300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.07 Archaeplastida
LOC_Os02g10300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 Archaeplastida
LOC_Os06g35320.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.05 Archaeplastida
LOC_Os06g40890.1 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.04 Archaeplastida
Solyc01g066070.3.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.07 Archaeplastida
Solyc06g009200.3.1 No alias Polygalacturonase OS=Nicotiana tabacum... 0.06 Archaeplastida
Zm00001e017747_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 Archaeplastida
Zm00001e022246_P002 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 Archaeplastida
Zm00001e025021_P003 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.06 Archaeplastida
Zm00001e030530_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 Archaeplastida
Zm00001e030532_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize : 345.0) 0.03 Archaeplastida
Zm00001e030536_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e030541_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.04 Archaeplastida
Zm00001e042518_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000902 cell morphogenesis IEP Neighborhood
BP GO:0000904 cell morphogenesis involved in differentiation IEP Neighborhood
BP GO:0001558 regulation of cell growth IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEP Neighborhood
MF GO:0004623 phospholipase A2 activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP Neighborhood
MF GO:0005275 amine transmembrane transporter activity IEP Neighborhood
MF GO:0005388 calcium-transporting ATPase activity IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006817 phosphate ion transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006862 nucleotide transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
BP GO:0006882 cellular zinc ion homeostasis IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0007338 single fertilization IEP Neighborhood
CC GO:0009505 plant-type cell wall IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009566 fertilization IEP Neighborhood
BP GO:0009653 anatomical structure morphogenesis IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
BP GO:0009789 positive regulation of abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009826 unidimensional cell growth IEP Neighborhood
BP GO:0009827 plant-type cell wall modification IEP Neighborhood
BP GO:0009860 pollen tube growth IEP Neighborhood
BP GO:0009932 cell tip growth IEP Neighborhood
BP GO:0009967 positive regulation of signal transduction IEP Neighborhood
BP GO:0010647 positive regulation of cell communication IEP Neighborhood
BP GO:0010942 positive regulation of cell death IEP Neighborhood
MF GO:0015085 calcium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015301 anion:anion antiporter activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015802 basic amino acid transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Neighborhood
BP GO:0022604 regulation of cell morphogenesis IEP Neighborhood
BP GO:0023056 positive regulation of signaling IEP Neighborhood
BP GO:0030307 positive regulation of cell growth IEP Neighborhood
CC GO:0030427 site of polarized growth IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
MF GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity IEP Neighborhood
MF GO:0034593 phosphatidylinositol bisphosphate phosphatase activity IEP Neighborhood
MF GO:0034594 phosphatidylinositol trisphosphate phosphatase activity IEP Neighborhood
MF GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEP Neighborhood
CC GO:0035838 growing cell tip IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
CC GO:0042995 cell projection IEP Neighborhood
BP GO:0043068 positive regulation of programmed cell death IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
CC GO:0044463 cell projection part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0045927 positive regulation of growth IEP Neighborhood
MF GO:0046030 inositol trisphosphate phosphatase activity IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Neighborhood
BP GO:0046855 inositol phosphate dephosphorylation IEP Neighborhood
BP GO:0046916 cellular transition metal ion homeostasis IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048588 developmental cell growth IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048868 pollen tube development IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
CC GO:0051286 cell tip IEP Neighborhood
BP GO:0051510 regulation of unidimensional cell growth IEP Neighborhood
MF GO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
MF GO:0052745 inositol phosphate phosphatase activity IEP Neighborhood
MF GO:0052866 phosphatidylinositol phosphate phosphatase activity IEP Neighborhood
BP GO:0055069 zinc ion homeostasis IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
BP GO:0071545 inositol phosphate catabolic process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
CC GO:0090404 pollen tube tip IEP Neighborhood
CC GO:0090406 pollen tube IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0106019 phosphatidylinositol-4,5-bisphosphate phosphatase activity IEP Neighborhood
CC GO:0120025 plasma membrane bounded cell projection IEP Neighborhood
CC GO:0120038 plasma membrane bounded cell projection part IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
BP GO:1901421 positive regulation of response to alcohol IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
BP GO:1905959 positive regulation of cellular response to alcohol IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 79 388
No external refs found!