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  5. AT4G20390

AT4G20390


Description : Uncharacterised protein family (UPF0497)


Gene families : OG0000389 (Archaeplastida) Phylogenetic Tree(s): OG0000389_tree ,
OG_05_0000192 (LandPlants) Phylogenetic Tree(s): OG_05_0000192_tree ,
OG_06_0000438 (SeedPlants) Phylogenetic Tree(s): OG_06_0000438_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G20390
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265970 evm_27.TU.AmTr_v1... Casparian strip membrane protein 3 OS=Sorghum bicolor 0.04 Archaeplastida
AMTR_s00016p00176090 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Ricinus communis 0.05 Archaeplastida
AMTR_s00016p00177260 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Ricinus communis 0.08 Archaeplastida
AMTR_s00016p00177940 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00016p00178190 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Vitis vinifera 0.05 Archaeplastida
AMTR_s00040p00135930 evm_27.TU.AmTr_v1... Casparian strip membrane protein 2 OS=Vitis vinifera 0.05 Archaeplastida
AMTR_s00057p00159510 evm_27.TU.AmTr_v1... CASP-like protein 1D1 OS=Ricinus communis 0.03 Archaeplastida
AMTR_s00092p00142720 evm_27.TU.AmTr_v1... CASP-like protein 1B2 OS=Populus trichocarpa 0.11 Archaeplastida
AT2G27370 No alias Uncharacterised protein family (UPF0497) 0.05 Archaeplastida
AT2G36100 No alias Uncharacterised protein family (UPF0497) 0.04 Archaeplastida
AT3G11550 No alias Uncharacterised protein family (UPF0497) 0.04 Archaeplastida
AT4G15610 No alias Uncharacterised protein family (UPF0497) 0.06 Archaeplastida
AT4G15620 No alias Uncharacterised protein family (UPF0497) 0.06 Archaeplastida
AT5G06200 No alias Uncharacterised protein family (UPF0497) 0.05 Archaeplastida
AT5G15290 No alias Uncharacterised protein family (UPF0497) 0.04 Archaeplastida
GSVIVT01010992001 No alias CASP-like protein 1E1 OS=Vitis vinifera 0.03 Archaeplastida
GSVIVT01020544001 No alias CASP-like protein 1C2 OS=Vitis vinifera 0.14 Archaeplastida
GSVIVT01036085001 No alias Casparian strip membrane protein 2 OS=Vitis vinifera 0.03 Archaeplastida
GSVIVT01037957001 No alias CASP-like protein 1B2 OS=Vitis vinifera 0.14 Archaeplastida
Gb_11696 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.08 Archaeplastida
Gb_26811 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_26813 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.04 Archaeplastida
Gb_40899 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 Archaeplastida
LOC_Os01g13560.1 No alias CASP-like protein 1C1 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os02g36845.1 No alias Casparian strip membrane protein 7 OS=Oryza sativa... 0.06 Archaeplastida
LOC_Os04g38690.1 No alias Casparian strip membrane protein 1 OS=Oryza rufipogon... 0.04 Archaeplastida
LOC_Os04g58760.1 No alias Casparian strip membrane protein 1 OS=Oryza sativa... 0.04 Archaeplastida
LOC_Os05g15630.1 No alias CASP-like protein BLE3 OS=Oryza sativa subsp. indica... 0.08 Archaeplastida
LOC_Os06g12500.1 No alias Casparian strip membrane protein 3 OS=Oryza sativa... 0.04 Archaeplastida
LOC_Os12g41690.1 No alias CASP-like protein 1B1 OS=Oryza sativa subsp. japonica... 0.09 Archaeplastida
MA_1041g0010 No alias Casparian strip membrane protein 2 OS=Triphysaria... 0.03 Archaeplastida
MA_10429324g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.02 Archaeplastida
MA_10431939g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.05 Archaeplastida
MA_3155878g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_5227376g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.04 Archaeplastida
MA_5618864g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.04 Archaeplastida
MA_64798g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.03 Archaeplastida
MA_67384g0020 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.06 Archaeplastida
MA_90653g0010 No alias no hits & (original description: none) 0.12 Archaeplastida
MA_93690g0010 No alias Casparian strip membrane protein 1 OS=Pinus taeda... 0.05 Archaeplastida
MA_94788g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 Archaeplastida
Pp3c12_23940V3.1 No alias Uncharacterised protein family (UPF0497) 0.02 Archaeplastida
Pp3c14_2270V3.1 No alias Uncharacterised protein family (UPF0497) 0.02 Archaeplastida
Pp3c22_13920V3.1 No alias Uncharacterised protein family (UPF0497) 0.02 Archaeplastida
Pp3c4_1550V3.1 No alias Uncharacterised protein family (UPF0497) 0.06 Archaeplastida
Solyc01g067300.3.1 No alias CASP-like protein 1D1 OS=Populus trichocarpa... 0.05 Archaeplastida
Solyc01g067330.3.1 No alias CASP-like protein 1E1 OS=Glycine max... 0.04 Archaeplastida
Solyc02g067190.4.1 No alias Casparian strip membrane protein 1 OS=Solanum tuberosum... 0.05 Archaeplastida
Solyc02g069730.3.1 No alias CASP-like protein 1B1 OS=Ricinus communis... 0.16 Archaeplastida
Solyc03g097720.4.1 No alias CASP-like protein 1F1 OS=Vitis vinifera... 0.05 Archaeplastida
Solyc04g005620.3.1 No alias Casparian strip membrane protein 2 OS=Solanum demissum... 0.05 Archaeplastida
Solyc06g074230.3.1 No alias Casparian strip membrane protein 2 OS=Triphysaria... 0.04 Archaeplastida
Solyc09g010200.4.1 No alias Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.03 Archaeplastida
Solyc10g083250.2.1 No alias Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.05 Archaeplastida
Zm00001e003216_P001 No alias CASP-like protein 1B1 OS=Zea mays (sp|b6tuh4|cspl2_maize : 130.0) 0.09 Archaeplastida
Zm00001e006491_P001 No alias Casparian strip membrane protein 2 OS=Zea mays... 0.05 Archaeplastida
Zm00001e015806_P001 No alias Casparian strip membrane protein 3 OS=Sorghum bicolor... 0.09 Archaeplastida
Zm00001e017631_P001 No alias CASP-like protein 1E1 OS=Zea mays (sp|b4fap1|cspl4_maize : 254.0) 0.02 Archaeplastida
Zm00001e024279_P001 No alias Casparian strip membrane protein 2 OS=Sorghum bicolor... 0.06 Archaeplastida
Zm00001e026902_P001 No alias CASP-like protein 1C2 OS=Zea mays (sp|b6szu6|cspl5_maize : 227.0) 0.16 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009267 cellular response to starvation IEP Neighborhood
BP GO:0009699 phenylpropanoid biosynthetic process IEP Neighborhood
BP GO:0009838 abscission IEP Neighborhood
BP GO:0009991 response to extracellular stimulus IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010106 cellular response to iron ion starvation IEP Neighborhood
BP GO:0010167 response to nitrate IEP Neighborhood
BP GO:0010227 floral organ abscission IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
BP GO:0010345 suberin biosynthetic process IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0015706 nitrate transport IEP Neighborhood
BP GO:0016098 monoterpenoid metabolic process IEP Neighborhood
BP GO:0016099 monoterpenoid biosynthetic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0018685 alkane 1-monooxygenase activity IEP Neighborhood
MF GO:0019825 oxygen binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0031667 response to nutrient levels IEP Neighborhood
BP GO:0031668 cellular response to extracellular stimulus IEP Neighborhood
BP GO:0031669 cellular response to nutrient levels IEP Neighborhood
MF GO:0034768 (E)-beta-ocimene synthase activity IEP Neighborhood
BP GO:0042594 response to starvation IEP Neighborhood
BP GO:0042761 very long-chain fatty acid biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0047617 acyl-CoA hydrolase activity IEP Neighborhood
MF GO:0050551 myrcene synthase activity IEP Neighborhood
BP GO:0071496 cellular response to external stimulus IEP Neighborhood
BP GO:0080184 response to phenylpropanoid IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1903338 regulation of cell wall organization or biogenesis IEP Neighborhood
BP GO:2000652 regulation of secondary cell wall biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR006702 CASP_dom 14 168
No external refs found!