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  5. Pp3c17_19520V3.1

Pp3c17_19520V3.1


Description : chromatin remodeling 1


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0005519 (LandPlants) Phylogenetic Tree(s): OG_05_0005519_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c17_19520V3.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.RNA-independent... 0.04 Archaeplastida
AMTR_s00111p00031560 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AT5G18620 CHR17 chromatin remodeling factor17 0.02 Archaeplastida
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.02 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.01 Archaeplastida
Cpa|evm.model.tig00000691.35 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00000863.2 No alias TATA-binding protein-associated factor BTAF1... 0.01 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.01 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cre09.g390000 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.01 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.07 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.11 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
LOC_Os03g51230.2 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.06 Archaeplastida
MA_102992g0010 No alias Probable chromatin-remodeling complex ATPase chain... 0.02 Archaeplastida
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.09 Archaeplastida
MA_42406g0010 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
Pp3c20_11500V3.1 No alias chromatin remodeling 5 0.03 Archaeplastida
Smo102612 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.05 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.08 Archaeplastida
Solyc02g085390.4.1 No alias chromatin remodeling factor (DDM1) 0.07 Archaeplastida
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.06 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!