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  5. AT4G23500

AT4G23500


Description : Pectin lyase-like superfamily protein


Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0000329 (LandPlants) Phylogenetic Tree(s): OG_05_0000329_tree ,
OG_06_0002536 (SeedPlants) Phylogenetic Tree(s): OG_06_0002536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G23500
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00118570 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
LOC_Os03g03350.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.05 Archaeplastida
LOC_Os05g50960.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida
MA_104339g0010 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
MA_10436451g0020 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Pp3c23_13240V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c6_7160V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Solyc07g042160.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Zm00001e021051_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0005618 cell wall IDA Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP Neighborhood
MF GO:0004029 aldehyde dehydrogenase (NAD) activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006521 regulation of cellular amino acid metabolic process IEP Neighborhood
BP GO:0007021 tubulin complex assembly IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0009044 xylan 1,4-beta-xylosidase activity IEP Neighborhood
BP GO:0009269 response to desiccation IEP Neighborhood
CC GO:0009505 plant-type cell wall IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009641 shade avoidance IEP Neighborhood
BP GO:0010025 wax biosynthetic process IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010166 wax metabolic process IEP Neighborhood
MF GO:0010326 methionine-oxo-acid transaminase activity IEP Neighborhood
BP GO:0010364 regulation of ethylene biosynthetic process IEP Neighborhood
BP GO:0010366 negative regulation of ethylene biosynthetic process IEP Neighborhood
BP GO:0010411 xyloglucan metabolic process IEP Neighborhood
BP GO:0010565 regulation of cellular ketone metabolic process IEP Neighborhood
BP GO:0010600 regulation of auxin biosynthetic process IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017022 myosin binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
MF GO:0030742 GTP-dependent protein binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0031335 regulation of sulfur amino acid metabolic process IEP Neighborhood
BP GO:0031336 negative regulation of sulfur amino acid metabolic process IEP Neighborhood
MF GO:0032029 myosin tail binding IEP Neighborhood
MF GO:0032036 myosin heavy chain binding IEP Neighborhood
BP GO:0032350 regulation of hormone metabolic process IEP Neighborhood
BP GO:0032351 negative regulation of hormone metabolic process IEP Neighborhood
BP GO:0032353 negative regulation of hormone biosynthetic process IEP Neighborhood
BP GO:0033238 regulation of cellular amine metabolic process IEP Neighborhood
BP GO:0033239 negative regulation of cellular amine metabolic process IEP Neighborhood
BP GO:0042762 regulation of sulfur metabolic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0045493 xylan catabolic process IEP Neighborhood
BP GO:0045763 negative regulation of cellular amino acid metabolic process IEP Neighborhood
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Neighborhood
BP GO:0046885 regulation of hormone biosynthetic process IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051175 negative regulation of sulfur metabolic process IEP Neighborhood
BP GO:0062012 regulation of small molecule metabolic process IEP Neighborhood
BP GO:0062014 negative regulation of small molecule metabolic process IEP Neighborhood
MF GO:0080115 myosin XI tail binding IEP Neighborhood
MF GO:0080176 xyloglucan 1,6-alpha-xylosidase activity IEP Neighborhood
BP GO:0090354 regulation of auxin metabolic process IEP Neighborhood
BP GO:0090356 negative regulation of auxin metabolic process IEP Neighborhood
BP GO:0090357 regulation of tryptophan metabolic process IEP Neighborhood
MF GO:0097599 xylanase activity IEP Neighborhood
BP GO:1900908 regulation of olefin metabolic process IEP Neighborhood
BP GO:1900909 negative regulation of olefin metabolic process IEP Neighborhood
BP GO:1900911 regulation of olefin biosynthetic process IEP Neighborhood
BP GO:1900912 negative regulation of olefin biosynthetic process IEP Neighborhood
BP GO:1901568 fatty acid derivative metabolic process IEP Neighborhood
BP GO:1901570 fatty acid derivative biosynthetic process IEP Neighborhood
BP GO:1901996 regulation of indoleacetic acid biosynthetic process via tryptophan IEP Neighborhood
BP GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 166 445
No external refs found!