1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c1_18400V3.1

Pp3c1_18400V3.1


Description : RNA binding Plectin/S10 domain-containing protein


Gene families : OG0001849 (Archaeplastida) Phylogenetic Tree(s): OG0001849_tree ,
OG_05_0001692 (LandPlants) Phylogenetic Tree(s): OG_05_0001692_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_18400V3.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00250710 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.3 Archaeplastida
AMTR_s00017p00221160 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
AT4G25740 No alias RNA binding Plectin/S10 domain-containing protein 0.34 Archaeplastida
AT5G41520 No alias RNA binding Plectin/S10 domain-containing protein 0.25 Archaeplastida
AT5G52650 No alias RNA binding Plectin/S10 domain-containing protein 0.57 Archaeplastida
Cpa|evm.model.tig00001164.5 No alias 40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica 0.32 Archaeplastida
Cre09.g411100 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
GSVIVT01019409001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.37 Archaeplastida
GSVIVT01028854001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
Gb_10517 No alias component RPS10 of SSU proteome 0.19 Archaeplastida
LOC_Os01g73160.1 No alias component RPS10 of SSU proteome 0.22 Archaeplastida
LOC_Os02g34460.2 No alias component RPS10 of SSU proteome 0.02 Archaeplastida
LOC_Os04g35090.1 No alias component RPS10 of SSU proteome 0.4 Archaeplastida
MA_111018g0010 No alias component RPS10 of SSU proteome 0.16 Archaeplastida
MA_314020g0010 No alias component RPS10 of SSU proteome 0.18 Archaeplastida
Mp2g00580.1 No alias component RPS10 of SSU proteome 0.48 Archaeplastida
Smo37555 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.29 Archaeplastida
Solyc01g099670.3.1 No alias component RPS10 of SSU proteome 0.4 Archaeplastida
Solyc12g096540.2.1 No alias component RPS10 of SSU proteome 0.38 Archaeplastida
Zm00001e008107_P001 No alias component RPS10 of SSU proteome 0.41 Archaeplastida
Zm00001e018554_P001 No alias No annotation 0.36 Archaeplastida
Zm00001e028280_P001 No alias component RPS10 of SSU proteome 0.43 Archaeplastida
Zm00001e040881_P001 No alias component RPS10 of SSU proteome 0.43 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!