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  5. Pp3c1_27980V3.1

Pp3c1_27980V3.1


Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG0002226 (Archaeplastida) Phylogenetic Tree(s): OG0002226_tree ,
OG_05_0002056 (LandPlants) Phylogenetic Tree(s): OG_05_0002056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_27980V3.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00158320 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 Archaeplastida
AMTR_s00046p00028310 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
AT3G48930 EMB1080 Nucleic acid-binding, OB-fold-like protein 0.4 Archaeplastida
AT4G30800 No alias Nucleic acid-binding, OB-fold-like protein 0.11 Archaeplastida
AT5G23740 RPS11-BETA ribosomal protein S11-beta 0.3 Archaeplastida
Cpa|evm.model.tig00000551.22 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 Archaeplastida
Cre12.g514500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.52 Archaeplastida
GSVIVT01012877001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.31 Archaeplastida
GSVIVT01035927001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.41 Archaeplastida
Gb_14912 No alias component RPS11 of SSU proteome 0.18 Archaeplastida
Gb_27579 No alias component RPS11 of SSU proteome 0.12 Archaeplastida
LOC_Os04g42380.1 No alias component RPS11 of SSU proteome 0.03 Archaeplastida
LOC_Os04g52361.1 No alias component RPS11 of SSU proteome 0.35 Archaeplastida
LOC_Os08g10608.1 No alias component RPS11 of SSU proteome 0.21 Archaeplastida
MA_19350g0010 No alias component RPS11 of SSU proteome 0.36 Archaeplastida
Mp4g23360.1 No alias component RPS11 of SSU proteome 0.29 Archaeplastida
Mp6g10500.1 No alias component RPS11 of SSU proteome 0.44 Archaeplastida
Smo268639 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
Solyc06g073790.3.1 No alias component RPS11 of SSU proteome 0.28 Archaeplastida
Solyc06g073800.3.1 No alias component RPS11 of SSU proteome 0.25 Archaeplastida
Solyc12g042080.2.1 No alias component RPS11 of SSU proteome 0.33 Archaeplastida
Zm00001e006955_P001 No alias component RPS11 of SSU proteome 0.25 Archaeplastida
Zm00001e041635_P001 No alias component RPS11 of SSU proteome 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 74 142
IPR032440 Ribosomal_S11_N 4 72
No external refs found!