AT4G25400

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0001232 (Archaeplastida) Phylogenetic Tree(s): OG0001232_tree ,
OG_05_0000765 (LandPlants) Phylogenetic Tree(s): OG_05_0000765_tree ,
OG_06_0000900 (SeedPlants) Phylogenetic Tree(s): OG_06_0000900_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G25400
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00045230	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.04	Archaeplastida
AMTR_s00038p00167360	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
AT1G10585	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
AT1G12540	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
AT4G25410	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	Archaeplastida
GSVIVT01020561001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.05	Archaeplastida
Gb_26737	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Gb_26741	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os01g01870.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_321195g0010	No alias	transcription factor (bHLH)	0.02	Archaeplastida
MA_8008760g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_938775g0010	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc02g078130.3.1	No alias	transcription factor (bHLH)	0.07	Archaeplastida
Solyc04g056535.1.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc09g074805.1.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
MF	GO:0002020	protease binding	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003973	(S)-2-hydroxy-acid oxidase activity	IEP	Neighborhood
MF	GO:0003996	acyl-CoA ligase activity	IEP	Neighborhood
MF	GO:0004034	aldose 1-epimerase activity	IEP	Neighborhood
MF	GO:0004081	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	IEP	Neighborhood
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Neighborhood
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	Neighborhood
MF	GO:0004497	monooxygenase activity	IEP	Neighborhood
MF	GO:0004551	nucleotide diphosphatase activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	Neighborhood
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	Neighborhood
MF	GO:0004801	sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
CC	GO:0005773	vacuole	IEP	Neighborhood
CC	GO:0005777	peroxisome	IEP	Neighborhood
CC	GO:0005783	endoplasmic reticulum	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006721	terpenoid metabolic process	IEP	Neighborhood
BP	GO:0006722	triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
BP	GO:0006829	zinc ion transport	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0007029	endoplasmic reticulum organization	IEP	Neighborhood
BP	GO:0007154	cell communication	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008422	beta-glucosidase activity	IEP	Neighborhood
MF	GO:0008796	bis(5'-nucleosyl)-tetraphosphatase activity	IEP	Neighborhood
MF	GO:0008891	glycolate oxidase activity	IEP	Neighborhood
MF	GO:0008893	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	IEP	Neighborhood
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	Neighborhood
BP	GO:0009051	pentose-phosphate shunt, oxidative branch	IEP	Neighborhood
BP	GO:0009166	nucleotide catabolic process	IEP	Neighborhood
BP	GO:0009267	cellular response to starvation	IEP	Neighborhood
BP	GO:0009410	response to xenobiotic stimulus	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009735	response to cytokinin	IEP	Neighborhood
BP	GO:0009749	response to glucose	IEP	Neighborhood
BP	GO:0009914	hormone transport	IEP	Neighborhood
BP	GO:0009926	auxin polar transport	IEP	Neighborhood
BP	GO:0009991	response to extracellular stimulus	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010038	response to metal ion	IEP	Neighborhood
BP	GO:0010039	response to iron ion	IEP	Neighborhood
BP	GO:0010043	response to zinc ion	IEP	Neighborhood
BP	GO:0010053	root epidermal cell differentiation	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010106	cellular response to iron ion starvation	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
CC	GO:0010168	ER body	IEP	Neighborhood
BP	GO:0010204	defense response signaling pathway, resistance gene-independent	IEP	Neighborhood
BP	GO:0010263	tricyclic triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0010299	detoxification of cobalt ion	IEP	Neighborhood
BP	GO:0010312	detoxification of zinc ion	IEP	Neighborhood
BP	GO:0010345	suberin biosynthetic process	IEP	Neighborhood
BP	GO:0010359	regulation of anion channel activity	IEP	Neighborhood
BP	GO:0010393	galacturonan metabolic process	IEP	Neighborhood
BP	GO:0010683	tricyclic triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0010959	regulation of metal ion transport	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
MF	GO:0015928	fucosidase activity	IEP	Neighborhood
BP	GO:0015959	diadenosine polyphosphate metabolic process	IEP	Neighborhood
BP	GO:0015961	diadenosine polyphosphate catabolic process	IEP	Neighborhood
BP	GO:0015965	diadenosine tetraphosphate metabolic process	IEP	Neighborhood
BP	GO:0015967	diadenosine tetraphosphate catabolic process	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
MF	GO:0016211	ammonia ligase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016744	transferase activity, transferring aldehyde or ketonic groups	IEP	Neighborhood
MF	GO:0016794	diphosphoric monoester hydrolase activity	IEP	Neighborhood
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Neighborhood
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	Neighborhood
BP	GO:0019632	shikimate metabolic process	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
MF	GO:0030410	nicotianamine synthase activity	IEP	Neighborhood
BP	GO:0030417	nicotianamine metabolic process	IEP	Neighborhood
BP	GO:0030418	nicotianamine biosynthetic process	IEP	Neighborhood
MF	GO:0031559	oxidosqualene cyclase activity	IEP	Neighborhood
BP	GO:0031667	response to nutrient levels	IEP	Neighborhood
BP	GO:0031668	cellular response to extracellular stimulus	IEP	Neighborhood
BP	GO:0031669	cellular response to nutrient levels	IEP	Neighborhood
BP	GO:0032409	regulation of transporter activity	IEP	Neighborhood
BP	GO:0032412	regulation of ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0032870	cellular response to hormone stimulus	IEP	Neighborhood
BP	GO:0032879	regulation of localization	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0033587	shikimate biosynthetic process	IEP	Neighborhood
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	Neighborhood
BP	GO:0034599	cellular response to oxidative stress	IEP	Neighborhood
BP	GO:0034614	cellular response to reactive oxygen species	IEP	Neighborhood
BP	GO:0034756	regulation of iron ion transport	IEP	Neighborhood
BP	GO:0035690	cellular response to drug	IEP	Neighborhood
BP	GO:0042126	nitrate metabolic process	IEP	Neighborhood
BP	GO:0042128	nitrate assimilation	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
CC	GO:0042579	microbody	IEP	Neighborhood
BP	GO:0042594	response to starvation	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0043269	regulation of ion transport	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044070	regulation of anion transport	IEP	Neighborhood
MF	GO:0045431	flavonol synthase activity	IEP	Neighborhood
BP	GO:0045488	pectin metabolic process	IEP	Neighborhood
BP	GO:0046434	organophosphate catabolic process	IEP	Neighborhood
MF	GO:0046715	active borate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0047617	acyl-CoA hydrolase activity	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048469	cell maturation	IEP	Neighborhood
BP	GO:0048527	lateral root development	IEP	Neighborhood
BP	GO:0048528	post-embryonic root development	IEP	Neighborhood
BP	GO:0048764	trichoblast maturation	IEP	Neighborhood
BP	GO:0048765	root hair cell differentiation	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051049	regulation of transport	IEP	Neighborhood
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051347	positive regulation of transferase activity	IEP	Neighborhood
BP	GO:0051552	flavone metabolic process	IEP	Neighborhood
BP	GO:0051554	flavonol metabolic process	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
MF	GO:0051746	thalianol synthase activity	IEP	Neighborhood
BP	GO:0051972	regulation of telomerase activity	IEP	Neighborhood
BP	GO:0051973	positive regulation of telomerase activity	IEP	Neighborhood
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	Neighborhood
BP	GO:0052546	cell wall pectin metabolic process	IEP	Neighborhood
BP	GO:0060918	auxin transport	IEP	Neighborhood
BP	GO:0061687	detoxification of inorganic compound	IEP	Neighborhood
BP	GO:0070887	cellular response to chemical stimulus	IEP	Neighborhood
BP	GO:0071241	cellular response to inorganic substance	IEP	Neighborhood
BP	GO:0071248	cellular response to metal ion	IEP	Neighborhood
BP	GO:0071281	cellular response to iron ion	IEP	Neighborhood
BP	GO:0071310	cellular response to organic substance	IEP	Neighborhood
BP	GO:0071365	cellular response to auxin stimulus	IEP	Neighborhood
BP	GO:0071366	cellular response to indolebutyric acid stimulus	IEP	Neighborhood
BP	GO:0071369	cellular response to ethylene stimulus	IEP	Neighborhood
BP	GO:0071407	cellular response to organic cyclic compound	IEP	Neighborhood
BP	GO:0071417	cellular response to organonitrogen compound	IEP	Neighborhood
BP	GO:0071495	cellular response to endogenous stimulus	IEP	Neighborhood
BP	GO:0071496	cellular response to external stimulus	IEP	Neighborhood
BP	GO:0071695	anatomical structure maturation	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0071731	response to nitric oxide	IEP	Neighborhood
BP	GO:0071732	cellular response to nitric oxide	IEP	Neighborhood
BP	GO:0071941	nitrogen cycle metabolic process	IEP	Neighborhood
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0072351	tricarboxylic acid biosynthetic process	IEP	Neighborhood
MF	GO:0072509	divalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0080003	thalianol metabolic process	IEP	Neighborhood
MF	GO:0080004	thalian-diol desaturase activity	IEP	Neighborhood
MF	GO:0080014	thalianol hydroxylase activity	IEP	Neighborhood
BP	GO:0080026	response to indolebutyric acid	IEP	Neighborhood
BP	GO:0080119	ER body organization	IEP	Neighborhood
BP	GO:0080184	response to phenylpropanoid	IEP	Neighborhood
BP	GO:0090627	plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:0090696	post-embryonic plant organ development	IEP	Neighborhood
BP	GO:0097366	response to bronchodilator	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood
BP	GO:1901698	response to nitrogen compound	IEP	Neighborhood
BP	GO:1901699	cellular response to nitrogen compound	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:1901701	cellular response to oxygen-containing compound	IEP	Neighborhood
BP	GO:1902170	cellular response to reactive nitrogen species	IEP	Neighborhood
BP	GO:1903959	regulation of anion transmembrane transport	IEP	Neighborhood
BP	GO:2000278	regulation of DNA biosynthetic process	IEP	Neighborhood
BP	GO:2000573	positive regulation of DNA biosynthetic process	IEP	Neighborhood
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	4	54

External Links

No external refs found!

AT4G25400

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation