AT4G25410

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0001232 (Archaeplastida) Phylogenetic Tree(s): OG0001232_tree ,
OG_05_0000765 (LandPlants) Phylogenetic Tree(s): OG_05_0000765_tree ,
OG_06_0000900 (SeedPlants) Phylogenetic Tree(s): OG_06_0000900_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G25410
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00269160	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
AMTR_s00032p00045230	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.05	Archaeplastida
AT1G10585	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
AT1G12540	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.07	Archaeplastida
AT4G25400	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	Archaeplastida
AT5G51780	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
GSVIVT01018460001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.02	Archaeplastida
GSVIVT01020561001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	Archaeplastida
Gb_26737	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os01g01870.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_14352g0010	No alias	transcription factor (bHLH)	0.04	Archaeplastida
MA_14544g0010	No alias	transcription factor (bHLH)	0.04	Archaeplastida
MA_290659g0010	No alias	transcription factor (bHLH)	0.04	Archaeplastida
MA_8008760g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_938775g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc02g078130.3.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc03g114230.2.1	No alias	Transcription factor bHLH162 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Solyc03g114237.1.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc06g035490.3.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Solyc09g074805.1.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003867	4-aminobutyrate transaminase activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0005985	sucrose metabolic process	IEP	Neighborhood
BP	GO:0006020	inositol metabolic process	IEP	Neighborhood
BP	GO:0006105	succinate metabolic process	IEP	Neighborhood
BP	GO:0006536	glutamate metabolic process	IEP	Neighborhood
BP	GO:0006538	glutamate catabolic process	IEP	Neighborhood
BP	GO:0006540	glutamate decarboxylation to succinate	IEP	Neighborhood
BP	GO:0006541	glutamine metabolic process	IEP	Neighborhood
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Neighborhood
BP	GO:0006595	polyamine metabolic process	IEP	Neighborhood
BP	GO:0006598	polyamine catabolic process	IEP	Neighborhood
BP	GO:0006772	thiamine metabolic process	IEP	Neighborhood
BP	GO:0006857	oligopeptide transport	IEP	Neighborhood
BP	GO:0006935	chemotaxis	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008172	S-methyltransferase activity	IEP	Neighborhood
BP	GO:0008300	isoprenoid catabolic process	IEP	Neighborhood
MF	GO:0008898	S-adenosylmethionine-homocysteine S-methyltransferase activity	IEP	Neighborhood
BP	GO:0009065	glutamine family amino acid catabolic process	IEP	Neighborhood
BP	GO:0009228	thiamine biosynthetic process	IEP	Neighborhood
BP	GO:0009310	amine catabolic process	IEP	Neighborhood
BP	GO:0009448	gamma-aminobutyric acid metabolic process	IEP	Neighborhood
BP	GO:0009450	gamma-aminobutyric acid catabolic process	IEP	Neighborhood
BP	GO:0009645	response to low light intensity stimulus	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
BP	GO:0009785	blue light signaling pathway	IEP	Neighborhood
BP	GO:0009804	coumarin metabolic process	IEP	Neighborhood
BP	GO:0009805	coumarin biosynthetic process	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
BP	GO:0009808	lignin metabolic process	IEP	Neighborhood
BP	GO:0009819	drought recovery	IEP	Neighborhood
BP	GO:0009865	pollen tube adhesion	IEP	Neighborhood
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0010183	pollen tube guidance	IEP	Neighborhood
BP	GO:0010244	response to low fluence blue light stimulus by blue low-fluence system	IEP	Neighborhood
BP	GO:0010422	regulation of brassinosteroid biosynthetic process	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
CC	GO:0015630	microtubule cytoskeleton	IEP	Neighborhood
BP	GO:0016103	diterpenoid catabolic process	IEP	Neighborhood
BP	GO:0016115	terpenoid catabolic process	IEP	Neighborhood
MF	GO:0016621	cinnamoyl-CoA reductase activity	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016841	ammonia-lyase activity	IEP	Neighborhood
MF	GO:0019172	glyoxalase III activity	IEP	Neighborhood
BP	GO:0019218	regulation of steroid metabolic process	IEP	Neighborhood
BP	GO:0019336	phenol-containing compound catabolic process	IEP	Neighborhood
BP	GO:0019482	beta-alanine metabolic process	IEP	Neighborhood
BP	GO:0019484	beta-alanine catabolic process	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
BP	GO:0030522	intracellular receptor signaling pathway	IEP	Neighborhood
MF	GO:0034387	4-aminobutyrate:pyruvate transaminase activity	IEP	Neighborhood
BP	GO:0042330	taxis	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Neighborhood
BP	GO:0042447	hormone catabolic process	IEP	Neighborhood
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042754	negative regulation of circadian rhythm	IEP	Neighborhood
BP	GO:0043649	dicarboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0044106	cellular amine metabolic process	IEP	Neighborhood
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:0045487	gibberellin catabolic process	IEP	Neighborhood
MF	GO:0045543	gibberellin 2-beta-dioxygenase activity	IEP	Neighborhood
MF	GO:0045548	phenylalanine ammonia-lyase activity	IEP	Neighborhood
BP	GO:0046244	salicylic acid catabolic process	IEP	Neighborhood
BP	GO:0046271	phenylpropanoid catabolic process	IEP	Neighborhood
BP	GO:0046274	lignin catabolic process	IEP	Neighborhood
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	Neighborhood
BP	GO:0050810	regulation of steroid biosynthetic process	IEP	Neighborhood
BP	GO:0050918	positive chemotaxis	IEP	Neighborhood
BP	GO:0051865	protein autoubiquitination	IEP	Neighborhood
MF	GO:0052634	C-19 gibberellin 2-beta-dioxygenase activity	IEP	Neighborhood
BP	GO:0071483	cellular response to blue light	IEP	Neighborhood
BP	GO:0090030	regulation of steroid hormone biosynthetic process	IEP	Neighborhood
BP	GO:0098609	cell-cell adhesion	IEP	Neighborhood
BP	GO:0098740	multi organism cell adhesion	IEP	Neighborhood
BP	GO:1900407	regulation of cellular response to oxidative stress	IEP	Neighborhood
BP	GO:1900409	positive regulation of cellular response to oxidative stress	IEP	Neighborhood
BP	GO:1902882	regulation of response to oxidative stress	IEP	Neighborhood
BP	GO:1902884	positive regulation of response to oxidative stress	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	44	93

External Links

No external refs found!

AT4G25410

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation