AT4G28250 (EXPB3, ATEXPB3,...)

Aliases : EXPB3, ATEXPB3, ATHEXP BETA 1.6

Description : expansin B3

Gene families : OG0000383 (Archaeplastida) Phylogenetic Tree(s): OG0000383_tree ,
OG_05_0000369 (LandPlants) Phylogenetic Tree(s): OG_05_0000369_tree ,
OG_06_0005944 (SeedPlants) Phylogenetic Tree(s): OG_06_0005944_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G28250
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os03g01260.1	No alias	Expansin-B8 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
LOC_Os03g01270.1	No alias	Expansin-B7 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
LOC_Os03g01610.1	No alias	Expansin-B1 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
LOC_Os03g01650.1	No alias	Expansin-B1 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
LOC_Os03g44290.1	No alias	Expansin-B12 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
LOC_Os04g46650.1	No alias	Expansin-B5 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
LOC_Os10g40090.1	No alias	Expansin-B9 OS=Oryza sativa subsp. japonica...	0.04	Archaeplastida
LOC_Os10g40730.1	No alias	Expansin-B4 OS=Oryza sativa subsp. japonica...	0.06	Archaeplastida
MA_10427897g0010	No alias	beta-class expansin	0.04	Archaeplastida
MA_9323664g0010	No alias	Expansin-B3 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Pp3c17_12970V3.1	No alias	expansin B3	0.03	Archaeplastida
Pp3c17_12980V3.1	No alias	expansin B3	0.03	Archaeplastida
Pp3c1_37980V3.1	No alias	expansin B3	0.02	Archaeplastida
Pp3c22_17770V3.1	No alias	expansin B3	0.06	Archaeplastida
Pp3c22_630V3.1	No alias	expansin B3	0.04	Archaeplastida
Zm00001e005019_P001	No alias	Expansin-B12 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Zm00001e007438_P001	No alias	beta-class expansin	0.03	Archaeplastida
Zm00001e033407_P001	No alias	Expansin-B11 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Zm00001e037880_P001	No alias	Expansin-B3 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
Zm00001e037914_P002	No alias	Expansin-B9 OS=Zea mays (sp\|q07154\|expb9_maize : 487.0)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006949	syncytium formation	IEP	Interproscan
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISS	Interproscan
BP	GO:0009826	unidimensional cell growth	ISS	Interproscan
BP	GO:0009826	unidimensional cell growth	NAS	Interproscan
BP	GO:0009827	plant-type cell wall modification	None	Extended
BP	GO:0009828	plant-type cell wall loosening	ISS	Interproscan
BP	GO:0009828	plant-type cell wall loosening	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010583	response to cyclopentenone	IEP	Interproscan
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004565	beta-galactosidase activity	IEP	Neighborhood
MF	GO:0004707	MAP kinase activity	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004816	asparagine-tRNA ligase activity	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0006421	asparaginyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006598	polyamine catabolic process	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
MF	GO:0008131	primary amine oxidase activity	IEP	Neighborhood
BP	GO:0009820	alkaloid metabolic process	IEP	Neighborhood
BP	GO:0009821	alkaloid biosynthetic process	IEP	Neighborhood
BP	GO:0009958	positive gravitropism	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0010065	primary meristem tissue development	IEP	Neighborhood
BP	GO:0010067	procambium histogenesis	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010315	auxin efflux	IEP	Neighborhood
MF	GO:0010328	auxin influx transmembrane transporter activity	IEP	Neighborhood
MF	GO:0010329	auxin efflux transmembrane transporter activity	IEP	Neighborhood
BP	GO:0010540	basipetal auxin transport	IEP	Neighborhood
BP	GO:0010541	acropetal auxin transport	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	Neighborhood
MF	GO:0015562	efflux transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015925	galactosidase activity	IEP	Neighborhood
MF	GO:0016289	CoA hydrolase activity	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016790	thiolester hydrolase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
MF	GO:0030570	pectate lyase activity	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
MF	GO:0047617	acyl-CoA hydrolase activity	IEP	Neighborhood
BP	GO:0048508	embryonic meristem development	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
MF	GO:0080161	auxin transmembrane transporter activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007117	Expansin_CBD	164	245
IPR009009	RlpA-like_DPBB	74	152

External Links

No external refs found!

AT4G28250 (EXPB3, ATEXPB3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation