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  5. Pp3c23_12730V3.1

Pp3c23_12730V3.1


Description : Ribosomal protein L1p/L10e family


Gene families : OG0001795 (Archaeplastida) Phylogenetic Tree(s): OG0001795_tree ,
OG_05_0001799 (LandPlants) Phylogenetic Tree(s): OG_05_0001799_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c23_12730V3.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00167280 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
AMTR_s00053p00163590 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
AT1G08360 No alias Ribosomal protein L1p/L10e family 0.18 Archaeplastida
AT2G27530 PGY1 Ribosomal protein L1p/L10e family 0.2 Archaeplastida
AT5G22440 No alias Ribosomal protein L1p/L10e family 0.1 Archaeplastida
Cpa|evm.model.tig00020697.31 No alias 60S ribosomal protein L10a OS=Oryza sativa subsp. japonica 0.06 Archaeplastida
Cre02.g101350 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
GSVIVT01033841001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
GSVIVT01036128001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
Gb_13744 No alias component RPL10a of LSU proteome component 0.08 Archaeplastida
Gb_28506 No alias component RPL10a of LSU proteome component 0.1 Archaeplastida
LOC_Os01g64090.1 No alias component RPL10a of LSU proteome component 0.13 Archaeplastida
LOC_Os02g21660.1 No alias component RPL10a of LSU proteome component 0.17 Archaeplastida
LOC_Os08g44380.1 No alias component RPL10a of LSU proteome component 0.06 Archaeplastida
LOC_Os08g44450.2 No alias component RPL10a of LSU proteome component 0.03 Archaeplastida
MA_12000g0010 No alias component RPL10a of LSU proteome component 0.03 Archaeplastida
MA_71921g0010 No alias component RPL10a of LSU proteome component 0.12 Archaeplastida
Mp3g07870.1 No alias component RPL10a of LSU proteome component 0.19 Archaeplastida
Smo230302 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Solyc01g009520.4.1 No alias component RPL10a of LSU proteome component 0.16 Archaeplastida
Solyc06g074300.4.1 No alias component RPL10a of LSU proteome component 0.18 Archaeplastida
Solyc11g068420.2.1 No alias component RPL10a of LSU proteome component 0.16 Archaeplastida
Zm00001e003939_P002 No alias component RPL10a of LSU proteome component 0.03 Archaeplastida
Zm00001e019205_P001 No alias component RPL10a of LSU proteome component 0.17 Archaeplastida
Zm00001e022063_P001 No alias component RPL10a of LSU proteome component 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006754 ATP biosynthetic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 21 210
No external refs found!