AT4G29100

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000624 (Archaeplastida) Phylogenetic Tree(s): OG0000624_tree ,
OG_05_0000347 (LandPlants) Phylogenetic Tree(s): OG_05_0000347_tree ,
OG_06_0000255 (SeedPlants) Phylogenetic Tree(s): OG_06_0000255_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G29100
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00092220	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.04	Archaeplastida
AT1G31050	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.09	Archaeplastida
AT3G20640	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
GSVIVT01005301001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.06	Archaeplastida
GSVIVT01018886001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01038142001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Gb_06063	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Gb_26693	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Gb_40387	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os02g17680.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os03g55220.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os04g41570.2	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os05g42180.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os07g28890.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Mp2g19970.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Smo117274	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.02	Archaeplastida
Solyc01g150101.1.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc03g120530.3.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Solyc07g020960.3.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e007719_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e010350_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e016395_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e031298_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e032055_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e034854_P002	No alias	transcription factor (bHLH)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000162	tryptophan biosynthetic process	IEP	Neighborhood
MF	GO:0000257	nitrilase activity	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003995	acyl-CoA dehydrogenase activity	IEP	Neighborhood
MF	GO:0004497	monooxygenase activity	IEP	Neighborhood
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004834	tryptophan synthase activity	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006805	xenobiotic metabolic process	IEP	Neighborhood
BP	GO:0007568	aging	IEP	Neighborhood
MF	GO:0008422	beta-glucosidase activity	IEP	Neighborhood
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	Neighborhood
BP	GO:0009830	cell wall modification involved in abscission	IEP	Neighborhood
BP	GO:0009850	auxin metabolic process	IEP	Neighborhood
BP	GO:0009900	dehiscence	IEP	Neighborhood
BP	GO:0009901	anther dehiscence	IEP	Neighborhood
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0010047	fruit dehiscence	IEP	Neighborhood
BP	GO:0010162	seed dormancy process	IEP	Neighborhood
MF	GO:0010178	IAA-amino acid conjugate hydrolase activity	IEP	Neighborhood
MF	GO:0010210	IAA-Phe conjugate hydrolase activity	IEP	Neighborhood
MF	GO:0010211	IAA-Leu conjugate hydrolase activity	IEP	Neighborhood
BP	GO:0010256	endomembrane system organization	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
MF	GO:0010334	sesquiterpene synthase activity	IEP	Neighborhood
BP	GO:0010439	regulation of glucosinolate biosynthetic process	IEP	Neighborhood
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015926	glucosidase activity	IEP	Neighborhood
BP	GO:0016143	S-glycoside metabolic process	IEP	Neighborhood
BP	GO:0016144	S-glycoside biosynthetic process	IEP	Neighborhood
BP	GO:0016145	S-glycoside catabolic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Neighborhood
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016744	transferase activity, transferring aldehyde or ketonic groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016815	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0018822	nitrile hydratase activity	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
BP	GO:0019757	glycosinolate metabolic process	IEP	Neighborhood
BP	GO:0019758	glycosinolate biosynthetic process	IEP	Neighborhood
BP	GO:0019759	glycosinolate catabolic process	IEP	Neighborhood
BP	GO:0019760	glucosinolate metabolic process	IEP	Neighborhood
BP	GO:0019761	glucosinolate biosynthetic process	IEP	Neighborhood
BP	GO:0019762	glucosinolate catabolic process	IEP	Neighborhood
BP	GO:0022411	cellular component disassembly	IEP	Neighborhood
BP	GO:0022611	dormancy process	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
MF	GO:0034768	(E)-beta-ocimene synthase activity	IEP	Neighborhood
BP	GO:0042178	xenobiotic catabolic process	IEP	Neighborhood
BP	GO:0042343	indole glucosinolate metabolic process	IEP	Neighborhood
BP	GO:0042430	indole-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042762	regulation of sulfur metabolic process	IEP	Neighborhood
BP	GO:0043255	regulation of carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044273	sulfur compound catabolic process	IEP	Neighborhood
BP	GO:0044277	cell wall disassembly	IEP	Neighborhood
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:0046219	indolalkylamine biosynthetic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
BP	GO:0046688	response to copper ion	IEP	Neighborhood
MF	GO:0047782	coniferin beta-glucosidase activity	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
MF	GO:0050551	myrcene synthase activity	IEP	Neighborhood
BP	GO:0050898	nitrile metabolic process	IEP	Neighborhood
MF	GO:0052578	alpha-farnesene synthase activity	IEP	Neighborhood
BP	GO:0055062	phosphate ion homeostasis	IEP	Neighborhood
BP	GO:0055081	anion homeostasis	IEP	Neighborhood
BP	GO:0055083	monovalent inorganic anion homeostasis	IEP	Neighborhood
BP	GO:0072505	divalent inorganic anion homeostasis	IEP	Neighborhood
BP	GO:0072506	trivalent inorganic anion homeostasis	IEP	Neighborhood
BP	GO:0080028	nitrile biosynthetic process	IEP	Neighborhood
MF	GO:0080061	indole-3-acetonitrile nitrilase activity	IEP	Neighborhood
MF	GO:0080107	8-methylthiopropyl glucosinolate S-oxygenase activity	IEP	Neighborhood
MF	GO:0080109	indole-3-acetonitrile nitrile hydratase activity	IEP	Neighborhood
BP	GO:1900376	regulation of secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:1901657	glycosyl compound metabolic process	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT4G29100

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation