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  5. Pp3c23_20060V3.1

Pp3c23_20060V3.1


Description : U2 small nuclear ribonucleoprotein A


Gene families : OG0004206 (Archaeplastida) Phylogenetic Tree(s): OG0004206_tree ,
OG_05_0006505 (LandPlants) Phylogenetic Tree(s): OG_05_0006505_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c23_20060V3.1
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.28 No alias U2 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre16.g679600 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
GSVIVT01001138001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
LOC_Os02g13990.1 No alias protein factor U2A of U2 small nuclear ribonucleoprotein... 0.02 Archaeplastida
Solyc03g117940.3.1 No alias protein factor U2A of U2 small nuclear ribonucleoprotein... 0.02 Archaeplastida
Zm00001e006375_P001 No alias protein factor U2A of U2 small nuclear ribonucleoprotein... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0010639 negative regulation of organelle organization IEP Neighborhood
BP GO:0010921 regulation of phosphatase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042555 MCM complex IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051095 regulation of helicase activity IEP Neighborhood
BP GO:0051097 negative regulation of helicase activity IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051129 negative regulation of cellular component organization IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051336 regulation of hydrolase activity IEP Neighborhood
BP GO:0051346 negative regulation of hydrolase activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1905462 regulation of DNA duplex unwinding IEP Neighborhood
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Neighborhood
BP GO:1905774 regulation of DNA helicase activity IEP Neighborhood
BP GO:1905775 negative regulation of DNA helicase activity IEP Neighborhood
BP GO:2001251 negative regulation of chromosome organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!