AT1G02900 (RALF1, ATRALF1, RALFL1)

Aliases : RALF1, ATRALF1, RALFL1

Description : rapid alkalinization factor 1

Gene families : OG0000804 (Archaeplastida) Phylogenetic Tree(s): OG0000804_tree ,
OG_05_0000478 (LandPlants) Phylogenetic Tree(s): OG_05_0000478_tree ,
OG_06_0000327 (SeedPlants) Phylogenetic Tree(s): OG_06_0000327_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G02900
Cluster	HCCA: Cluster_174

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00262240	evm_27.TU.AmTr_v1...	Phytohormones.signalling peptides.CRP...	0.06	Archaeplastida
AMTR_s00022p00078480	evm_27.TU.AmTr_v1...	Phytohormones.signalling peptides.CRP...	0.02	Archaeplastida
AMTR_s00044p00139580	evm_27.TU.AmTr_v1...	Phytohormones.signalling peptides.CRP...	0.03	Archaeplastida
AT3G05490	RALFL22	ralf-like 22	0.03	Archaeplastida
GSVIVT01017757001	No alias	Phytohormones.signalling peptides.CRP...	0.03	Archaeplastida
GSVIVT01027973001	No alias	Phytohormones.signalling peptides.CRP...	0.11	Archaeplastida
GSVIVT01031147001	No alias	Phytohormones.signalling peptides.CRP...	0.04	Archaeplastida
Gb_20801	No alias	RALF/RALFL precursor polypeptide	0.02	Archaeplastida
Gb_29483	No alias	RALF/RALFL precursor polypeptide	0.03	Archaeplastida
LOC_Os01g25540.1	No alias	RALF/RALFL precursor polypeptide	0.05	Archaeplastida
LOC_Os01g25560.1	No alias	RALF/RALFL precursor polypeptide	0.1	Archaeplastida
LOC_Os02g44940.1	No alias	RALF/RALFL precursor polypeptide	0.03	Archaeplastida
LOC_Os10g18170.1	No alias	RALF/RALFL precursor polypeptide	0.04	Archaeplastida
LOC_Os11g26880.1	No alias	RALF/RALFL precursor polypeptide	0.03	Archaeplastida
MA_10119624g0010	No alias	RALF/RALFL precursor polypeptide	0.04	Archaeplastida
MA_52559g0010	No alias	RALF/RALFL precursor polypeptide	0.04	Archaeplastida
Solyc09g074890.1.1	No alias	RALF/RALFL precursor polypeptide	0.07	Archaeplastida
Zm00001e026290_P001	No alias	RALF/RALFL precursor polypeptide	0.03	Archaeplastida
Zm00001e039701_P001	No alias	RALF/RALFL precursor polypeptide	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0004871	obsolete signal transducer activity	TAS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0007154	cell communication	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007267	cell-cell signaling	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019722	calcium-mediated signaling	IDA	Interproscan
BP	GO:0019932	second-messenger-mediated signaling	None	Extended
BP	GO:0023052	signaling	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
CC	GO:0048046	apoplast	ISS	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000014	single-stranded DNA endodeoxyribonuclease activity	IEP	Neighborhood
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
BP	GO:0002238	response to molecule of fungal origin	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003680	AT DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Neighborhood
MF	GO:0004536	deoxyribonuclease activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006308	DNA catabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
BP	GO:0006857	oligopeptide transport	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
MF	GO:0008493	tetracycline transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009267	cellular response to starvation	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009690	cytokinin metabolic process	IEP	Neighborhood
BP	GO:0009691	cytokinin biosynthetic process	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
BP	GO:0009804	coumarin metabolic process	IEP	Neighborhood
BP	GO:0009805	coumarin biosynthetic process	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
BP	GO:0009991	response to extracellular stimulus	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010053	root epidermal cell differentiation	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010106	cellular response to iron ion starvation	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
MF	GO:0010283	pinoresinol reductase activity	IEP	Neighborhood
BP	GO:0010345	suberin biosynthetic process	IEP	Neighborhood
BP	GO:0010359	regulation of anion channel activity	IEP	Neighborhood
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0010410	hemicellulose metabolic process	IEP	Neighborhood
BP	GO:0010413	glucuronoxylan metabolic process	IEP	Neighborhood
MF	GO:0015665	alcohol transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
BP	GO:0031667	response to nutrient levels	IEP	Neighborhood
BP	GO:0031668	cellular response to extracellular stimulus	IEP	Neighborhood
BP	GO:0031669	cellular response to nutrient levels	IEP	Neighborhood
BP	GO:0032409	regulation of transporter activity	IEP	Neighborhood
BP	GO:0032412	regulation of ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032879	regulation of localization	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0034762	regulation of transmembrane transport	IEP	Neighborhood
BP	GO:0034765	regulation of ion transmembrane transport	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	Neighborhood
BP	GO:0040034	regulation of development, heterochronic	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042446	hormone biosynthetic process	IEP	Neighborhood
BP	GO:0042594	response to starvation	IEP	Neighborhood
MF	GO:0042895	antibiotic transmembrane transporter activity	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
BP	GO:0043269	regulation of ion transport	IEP	Neighborhood
MF	GO:0043765	T/G mismatch-specific endonuclease activity	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0044070	regulation of anion transport	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Neighborhood
MF	GO:0045431	flavonol synthase activity	IEP	Neighborhood
BP	GO:0045491	xylan metabolic process	IEP	Neighborhood
BP	GO:0045492	xylan biosynthetic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048469	cell maturation	IEP	Neighborhood
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	Neighborhood
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	Neighborhood
BP	GO:0048527	lateral root development	IEP	Neighborhood
BP	GO:0048528	post-embryonic root development	IEP	Neighborhood
BP	GO:0048764	trichoblast maturation	IEP	Neighborhood
BP	GO:0048765	root hair cell differentiation	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
MF	GO:0050284	sinapate 1-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0050734	hydroxycinnamoyltransferase activity	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051049	regulation of transport	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0052325	cell wall pectin biosynthetic process	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0071496	cellular response to external stimulus	IEP	Neighborhood
BP	GO:0071695	anatomical structure maturation	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
MF	GO:0080045	quercetin 3'-O-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0090627	plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:0090696	post-embryonic plant organ development	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901698	response to nitrogen compound	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:1903959	regulation of anion transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR008801	RALF	58	119

External Links

No external refs found!

AT1G02900 (RALF1, ATRALF1, RALFL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation