AT1G20010 (TUB5)

Aliases : TUB5

Description : tubulin beta-5 chain

Gene families : OG0000156 (Archaeplastida) Phylogenetic Tree(s): OG0000156_tree ,
OG_05_0000074 (LandPlants) Phylogenetic Tree(s): OG_05_0000074_tree ,
OG_06_0000065 (SeedPlants) Phylogenetic Tree(s): OG_06_0000065_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G20010
Cluster	HCCA: Cluster_180

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00251790	evm_27.TU.AmTr_v1...	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
AMTR_s00009p00255970	evm_27.TU.AmTr_v1...	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.05	Archaeplastida
AMTR_s00010p00119100	evm_27.TU.AmTr_v1...	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.05	Archaeplastida
AMTR_s00029p00190040	evm_27.TU.AmTr_v1...	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	Archaeplastida
AT5G12250	TUB6	beta-6 tubulin	0.05	Archaeplastida
Cpa\|evm.model.tig00001067.6	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.01	Archaeplastida
GSVIVT01019758001	No alias	Tubulin beta-4 chain OS=Eleusine indica	0.01	Archaeplastida
GSVIVT01021707001	No alias	Tubulin beta chain (Fragment) OS=Glycine max	0.04	Archaeplastida
GSVIVT01025778001	No alias	Tubulin beta-4 chain OS=Eleusine indica	0.03	Archaeplastida
Gb_15590	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.06	Archaeplastida
Gb_18746	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Gb_28116	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.05	Archaeplastida
LOC_Os01g18050.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.05	Archaeplastida
LOC_Os01g59150.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.06	Archaeplastida
LOC_Os02g07060.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.06	Archaeplastida
LOC_Os03g01530.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
LOC_Os03g56810.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.01	Archaeplastida
LOC_Os05g34170.2	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
MA_10431251g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
MA_230579g0010	No alias	Tubulin beta-8 chain OS=Zea mays (sp\|q41785\|tbb8_maize : 281.0)	0.03	Archaeplastida
MA_55439g0010	No alias	Tubulin beta-1 chain OS=Solanum tuberosum...	0.03	Archaeplastida
MA_623245g0010	No alias	No annotation	0.02	Archaeplastida
MA_72744g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.1	Archaeplastida
MA_79708g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
MA_9451675g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
MA_947959g0010	No alias	No annotation	0.04	Archaeplastida
MA_9578301g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Mp1g20730.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
Pp3c5_20690V3.1	No alias	tubulin beta 8	0.03	Archaeplastida
Smo164404	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.05	Archaeplastida
Smo170592	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	Archaeplastida
Smo183654	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Smo408201	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Solyc03g025730.3.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.06	Archaeplastida
Solyc06g035970.3.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.07	Archaeplastida
Solyc06g076640.3.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Solyc10g080940.3.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.05	Archaeplastida
Solyc10g086760.2.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.06	Archaeplastida
Zm00001e011926_P001	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Zm00001e012336_P001	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Zm00001e019525_P002	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Zm00001e025464_P001	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
Zm00001e028896_P004	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.01	Archaeplastida
Zm00001e030351_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005200	structural constituent of cytoskeleton	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0007017	microtubule-based process	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044430	cytoskeletal part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044437	vacuolar part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0045298	tubulin complex	ISS	Interproscan
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Neighborhood
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Neighborhood
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
CC	GO:0000322	storage vacuole	IEP	Neighborhood
CC	GO:0000326	protein storage vacuole	IEP	Neighborhood
BP	GO:0000578	embryonic axis specification	IEP	Neighborhood
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
BP	GO:0001558	regulation of cell growth	IEP	Neighborhood
MF	GO:0004312	fatty acid synthase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004560	alpha-L-fucosidase activity	IEP	Neighborhood
MF	GO:0004565	beta-galactosidase activity	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0004857	enzyme inhibitor activity	IEP	Neighborhood
MF	GO:0005199	structural constituent of cell wall	IEP	Neighborhood
MF	GO:0005275	amine transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005372	water transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005773	vacuole	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006534	cysteine metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006816	calcium ion transport	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
BP	GO:0007030	Golgi organization	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
BP	GO:0008156	negative regulation of DNA replication	IEP	Neighborhood
CC	GO:0008180	COP9 signalosome	IEP	Neighborhood
BP	GO:0008361	regulation of cell size	IEP	Neighborhood
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009069	serine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
CC	GO:0009531	secondary cell wall	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009638	phototropism	IEP	Neighborhood
BP	GO:0009645	response to low light intensity stimulus	IEP	Neighborhood
BP	GO:0009650	UV protection	IEP	Neighborhood
BP	GO:0009651	response to salt stress	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
MF	GO:0009672	auxin:proton symporter activity	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009737	response to abscisic acid	IEP	Neighborhood
BP	GO:0009739	response to gibberellin	IEP	Neighborhood
BP	GO:0009741	response to brassinosteroid	IEP	Neighborhood
BP	GO:0009785	blue light signaling pathway	IEP	Neighborhood
BP	GO:0009798	axis specification	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009832	plant-type cell wall biogenesis	IEP	Neighborhood
CC	GO:0009897	external side of plasma membrane	IEP	Neighborhood
BP	GO:0009914	hormone transport	IEP	Neighborhood
MF	GO:0009922	fatty acid elongase activity	IEP	Neighborhood
BP	GO:0009926	auxin polar transport	IEP	Neighborhood
CC	GO:0009930	longitudinal side of cell surface	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
BP	GO:0009942	longitudinal axis specification	IEP	Neighborhood
BP	GO:0010015	root morphogenesis	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010143	cutin biosynthetic process	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
MF	GO:0010329	auxin efflux transmembrane transporter activity	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
BP	GO:0010948	negative regulation of cell cycle process	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015200	methylammonium transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015204	urea transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015250	water channel activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0015562	efflux transmembrane transporter activity	IEP	Neighborhood
CC	GO:0015629	actin cytoskeleton	IEP	Neighborhood
BP	GO:0015840	urea transport	IEP	Neighborhood
MF	GO:0015928	fucosidase activity	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
MF	GO:0016630	protochlorophyllide reductase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016791	phosphatase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0019210	kinase inhibitor activity	IEP	Neighborhood
BP	GO:0019344	cysteine biosynthetic process	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0019755	one-carbon compound transport	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022838	substrate-specific channel activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
BP	GO:0030308	negative regulation of cell growth	IEP	Neighborhood
BP	GO:0030497	fatty acid elongation	IEP	Neighborhood
BP	GO:0030522	intracellular receptor signaling pathway	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0032876	negative regulation of DNA endoreduplication	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042335	cuticle development	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
CC	GO:0042807	central vacuole	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0045926	negative regulation of growth	IEP	Neighborhood
CC	GO:0046658	anchored component of plasma membrane	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0047513	1,2-alpha-L-fucosidase activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051017	actin filament bundle assembly	IEP	Neighborhood
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0060918	auxin transport	IEP	Neighborhood
BP	GO:0061572	actin filament bundle organization	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0070838	divalent metal ion transport	IEP	Neighborhood
BP	GO:0071258	cellular response to gravity	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0072511	divalent inorganic cation transport	IEP	Neighborhood
BP	GO:0080167	response to karrikin	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
MF	GO:0090447	glycerol-3-phosphate 2-O-acyltransferase activity	IEP	Neighborhood
BP	GO:0097305	response to alcohol	IEP	Neighborhood
CC	GO:0098552	side of membrane	IEP	Neighborhood
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Neighborhood
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood
BP	GO:2000038	regulation of stomatal complex development	IEP	Neighborhood
BP	GO:2000104	negative regulation of DNA-dependent DNA replication	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	262	383
IPR003008	Tubulin_FtsZ_GTPase	3	212

External Links

No external refs found!

AT1G20010 (TUB5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation