1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c2_29600V3.1

Pp3c2_29600V3.1


Description : Ribosomal protein L16p/L10e family protein


Gene families : OG0002582 (Archaeplastida) Phylogenetic Tree(s): OG0002582_tree ,
OG_05_0002513 (LandPlants) Phylogenetic Tree(s): OG_05_0002513_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_29600V3.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00080890 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
AMTR_s00077p00151750 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
AT1G14320 SAC52, RPL10, RPL10A Ribosomal protein L16p/L10e family protein 0.48 Archaeplastida
AT1G26910 RPL10B Ribosomal protein L16p/L10e family protein 0.03 Archaeplastida
Cpa|evm.model.tig00001424.5 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 Archaeplastida
GSVIVT01001137001 No alias 60S ribosomal protein L10 OS=Vitis riparia 0.19 Archaeplastida
GSVIVT01024537001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
Gb_06067 No alias component RPL10 of LSU proteome component 0.15 Archaeplastida
LOC_Os11g11390.1 No alias component RPL10 of LSU proteome component 0.14 Archaeplastida
MA_17326g0010 No alias component RPL10 of LSU proteome component 0.34 Archaeplastida
Mp4g23990.1 No alias component RPL10 of LSU proteome component 0.47 Archaeplastida
Smo437527 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Solyc06g007520.4.1 No alias component RPL10 of LSU proteome component 0.36 Archaeplastida
Solyc06g082650.4.1 No alias component RPL10 of LSU proteome component 0.41 Archaeplastida
Solyc06g082670.3.1 No alias component RPL10 of LSU proteome component 0.3 Archaeplastida
Zm00001e004933_P001 No alias component RPL10 of LSU proteome component 0.14 Archaeplastida
Zm00001e012474_P002 No alias component RPL10 of LSU proteome component 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 12 166
No external refs found!