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  5. Pp3c4_8620V3.1

Pp3c4_8620V3.1


Description : ribosomal protein L23AB


Gene families : OG0002506 (Archaeplastida) Phylogenetic Tree(s): OG0002506_tree ,
OG_05_0002661 (LandPlants) Phylogenetic Tree(s): OG_05_0002661_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_8620V3.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00069970 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
AMTR_s00029p00132520 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
AT2G39460 RPL23A, RPL23AA, ATRPL23A ribosomal protein L23AA 0.44 Archaeplastida
AT3G55280 RPL23AB ribosomal protein L23AB 0.25 Archaeplastida
Cpa|evm.model.tig00000037.39 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 Archaeplastida
Cre06.g282500 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.39 Archaeplastida
GSVIVT01025041001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
GSVIVT01025606001 No alias 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana 0.08 Archaeplastida
LOC_Os01g24690.1 No alias component RPL23a of LSU proteome component 0.15 Archaeplastida
LOC_Os04g42270.2 No alias component RPL23a of LSU proteome component 0.21 Archaeplastida
MA_10430928g0010 No alias component RPL23a of LSU proteome component 0.32 Archaeplastida
MA_10436962g0020 No alias component RPL23a of LSU proteome component 0.06 Archaeplastida
Mp2g00570.1 No alias component RPL23a of LSU proteome component 0.45 Archaeplastida
Pp3c3_21160V3.1 No alias ribosomal protein L23AB 0.22 Archaeplastida
Smo271663 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
Solyc09g005720.3.1 No alias component RPL23a of LSU proteome component 0.23 Archaeplastida
Solyc10g086330.2.1 No alias component RPL23a of LSU proteome component 0.15 Archaeplastida
Zm00001e007662_P001 No alias component RPL23a of LSU proteome component 0.2 Archaeplastida
Zm00001e031062_P001 No alias component RPL23a of LSU proteome component 0.04 Archaeplastida
Zm00001e041164_P001 No alias component RPL23a of LSU proteome component 0.23 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
InterPro domains Description Start Stop
IPR013025 Ribosomal_L25/23 75 136
IPR005633 Ribosomal_L23/L25_N 15 65
No external refs found!