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  5. Pp3c6_1080V3.1

Pp3c6_1080V3.1


Description : eukaryotic translation initiation factor 4A1


Gene families : OG0000822 (Archaeplastida) Phylogenetic Tree(s): OG0000822_tree ,
OG_05_0001711 (LandPlants) Phylogenetic Tree(s): OG_05_0001711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c6_1080V3.1
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00181640 evm_27.TU.AmTr_v1... Protein biosynthesis.translation initiation.mRNA... 0.04 Archaeplastida
AT1G51380 No alias DEA(D/H)-box RNA helicase family protein 0.02 Archaeplastida
AT1G54270 EIF4A-2 eif4a-2 0.02 Archaeplastida
AT1G72730 No alias DEA(D/H)-box RNA helicase family protein 0.03 Archaeplastida
AT3G13920 TIF4A1, EIF4A1, RH4 eukaryotic translation initiation factor 4A1 0.03 Archaeplastida
Cpa|evm.model.tig00001339.22 No alias RNA processing.RNA quality control Exon Junction complex... 0.01 Archaeplastida
Cre06.g298650 No alias Protein biosynthesis.translation initiation.mRNA... 0.01 Archaeplastida
GSVIVT01035374001 No alias Protein biosynthesis.translation initiation.mRNA... 0.03 Archaeplastida
LOC_Os06g48750.2 No alias mRNA unwinding factor (eIF4A) 0.03 Archaeplastida
Mp2g02760.1 No alias mRNA unwinding factor (eIF4A) 0.1 Archaeplastida
Pp3c5_28210V3.1 No alias eukaryotic translation initiation factor 4A1 0.06 Archaeplastida
Pp3s93_30V3.1 No alias eukaryotic translation initiation factor 4A1 0.03 Archaeplastida
Smo143895 No alias Protein biosynthesis.translation initiation.mRNA... 0.07 Archaeplastida
Solyc08g062800.3.1 No alias mRNA unwinding factor (eIF4A) 0.13 Archaeplastida
Solyc12g095990.2.1 No alias mRNA unwinding factor (eIF4A) 0.04 Archaeplastida
Zm00001e016284_P001 No alias helicase component eIF4A3 of RNA quality control Exon... 0.02 Archaeplastida
Zm00001e023523_P001 No alias helicase component eIF4A3 of RNA quality control Exon... 0.02 Archaeplastida
Zm00001e030233_P004 No alias mRNA unwinding factor (eIF4A) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 65 226
IPR001650 Helicase_C 266 374
No external refs found!