Pp3c6_12420V3.1

Description : fibrillarin 2

Gene families : OG0003455 (Archaeplastida) Phylogenetic Tree(s): OG0003455_tree ,
OG_05_0003421 (LandPlants) Phylogenetic Tree(s): OG_05_0003421_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c6_12420V3.1
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00218020	evm_27.TU.AmTr_v1...	RNA processing.RNA modification.rRNA/tRNA...	0.03	Archaeplastida
AT4G25630	FIB2, ATFIB2	fibrillarin 2	0.05	Archaeplastida
AT5G52470	FIB1, ATFIB1,...	fibrillarin 1	0.05	Archaeplastida
Cpa\|evm.model.tig00001049.16	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.07	Archaeplastida
Cre02.g077300	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.07	Archaeplastida
GSVIVT01028887001	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.06	Archaeplastida
Gb_33899	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	Archaeplastida
LOC_Os05g08360.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.02	Archaeplastida
MA_124463g0010	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.05	Archaeplastida
Mp2g12880.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.05	Archaeplastida
Pp3c27_4160V3.1	No alias	fibrillarin 2	0.03	Archaeplastida
Pp3c5_11200V3.1	No alias	fibrillarin 2	0.05	Archaeplastida
Solyc03g025270.3.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity	IEP	Neighborhood
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	Neighborhood
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Neighborhood
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Neighborhood
BP	GO:0009112	nucleobase metabolic process	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016830	carbon-carbon lyase activity	IEP	Neighborhood
MF	GO:0016831	carboxy-lyase activity	IEP	Neighborhood
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
BP	GO:0046112	nucleobase biosynthetic process	IEP	Neighborhood
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
BP	GO:1901657	glycosyl compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000692	Fibrillarin	76	303

External Links

No external refs found!

Pp3c6_12420V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation