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  5. Pp3c9_4400V3.1

Pp3c9_4400V3.1


Description : high mobility group


Gene families : OG0003460 (Archaeplastida) Phylogenetic Tree(s): OG0003460_tree ,
OG_05_0003804 (LandPlants) Phylogenetic Tree(s): OG_05_0003804_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c9_4400V3.1
Cluster HCCA: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00107740 evm_27.TU.AmTr_v1... Chromatin organisation.histone chaperone activities.FACT... 0.02 Archaeplastida
Cre01.g029450 No alias Chromatin organisation.histone chaperone activities.FACT... 0.03 Archaeplastida
MA_10427704g0010 No alias FACT complex subunit SSRP1 OS=Catharanthus roseus... 0.02 Archaeplastida
MA_5982g0010 No alias component SSRP of FACT histone chaperone complex 0.02 Archaeplastida
MA_98273g0010 No alias component SSRP of FACT histone chaperone complex 0.01 Archaeplastida
Mp8g16760.1 No alias component SSRP of FACT histone chaperone complex 0.02 Archaeplastida
Solyc02g087710.3.1 No alias component SSRP of FACT histone chaperone complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!