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  5. MA_10382339g0010

MA_10382339g0010


Description : basal transcription factor (Sigma)


Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0003010 (LandPlants) Phylogenetic Tree(s): OG_05_0003010_tree ,
OG_06_0004376 (SeedPlants) Phylogenetic Tree(s): OG_06_0004376_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10382339g0010
Cluster HCCA: Cluster_456

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00258380 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00015p00252960 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
LOC_Os08g06630.1 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
Mp7g15030.1 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
Solyc03g097320.3.1 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
Zm00001e011616_P008 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
Zm00001e021683_P001 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
Zm00001e032596_P002 No alias basal transcription factor (Sigma) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 128 171
IPR007627 RNA_pol_sigma70_r2 66 109
No external refs found!