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  5. AT5G09280

AT5G09280


Description : Pectin lyase-like superfamily protein


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G09280
Cluster HCCA: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.06 Archaeplastida
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT1G11920 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.06 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.06 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.05 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G53190 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.04 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.07 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.04 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.06 Archaeplastida
LOC_Os05g22800.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.04 Archaeplastida
LOC_Os06g05260.1 No alias pectate lyase 0.04 Archaeplastida
LOC_Os10g31910.1 No alias pectate lyase 0.03 Archaeplastida
MA_10429028g0020 No alias pectate lyase 0.02 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.04 Archaeplastida
MA_185203g0010 No alias pectate lyase 0.02 Archaeplastida
MA_474372g0010 No alias pectate lyase 0.02 Archaeplastida
MA_6474333g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.02 Archaeplastida
MA_956526g0010 No alias pectate lyase 0.04 Archaeplastida
Pp3c3_20320V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Solyc02g067450.4.1 No alias pectate lyase 0.05 Archaeplastida
Solyc03g058890.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc03g058910.3.1 No alias pectate lyase 0.05 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc06g071020.3.1 No alias pectate lyase 0.04 Archaeplastida
Solyc09g061890.3.1 No alias pectate lyase 0.03 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.03 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000793 condensed chromosome IEP Neighborhood
MF GO:0004089 carbonate dehydratase activity IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005351 carbohydrate:proton symporter activity IEP Neighborhood
MF GO:0005402 carbohydrate:cation symporter activity IEP Neighborhood
MF GO:0005451 monovalent cation:proton antiporter activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006730 one-carbon metabolic process IEP Neighborhood
BP GO:0006814 sodium ion transport IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
BP GO:0009860 pollen tube growth IEP Neighborhood
BP GO:0009932 cell tip growth IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015081 sodium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015385 sodium:proton antiporter activity IEP Neighborhood
MF GO:0015491 cation:cation antiporter activity IEP Neighborhood
BP GO:0015749 monosaccharide transmembrane transport IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
BP GO:0034219 carbohydrate transmembrane transport IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0035725 sodium ion transmembrane transport IEP Neighborhood
CC GO:0042995 cell projection IEP Neighborhood
MF GO:0046910 pectinesterase inhibitor activity IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0090406 pollen tube IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0099516 ion antiporter activity IEP Neighborhood
CC GO:0120025 plasma membrane bounded cell projection IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 78 238
No external refs found!