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  5. MA_10426054g0020

MA_10426054g0020


Description : component Symplekin/Pta1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0001799 (Archaeplastida) Phylogenetic Tree(s): OG0001799_tree ,
OG_05_0013996 (LandPlants) Phylogenetic Tree(s): OG_05_0013996_tree ,
OG_06_0013913 (SeedPlants) Phylogenetic Tree(s): OG_06_0013913_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10426054g0020
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00088050 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.05 Archaeplastida
AT1G27595 No alias CONTAINS InterPro DOMAIN/s: Symplekin tight junction... 0.06 Archaeplastida
AT5G01400 ESP4 HEAT repeat-containing protein 0.1 Archaeplastida
GSVIVT01009244001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.06 Archaeplastida
GSVIVT01011157001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.07 Archaeplastida
Gb_23976 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.1 Archaeplastida
Gb_24672 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.09 Archaeplastida
LOC_Os01g49940.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.07 Archaeplastida
LOC_Os07g49320.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
MA_433916g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
MA_8459784g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp6g03410.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Pp3c2_10640V3.1 No alias HEAT repeat-containing protein 0.06 Archaeplastida
Solyc04g076900.2.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
Solyc04g076910.3.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.08 Archaeplastida
Solyc09g005330.3.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
Zm00001e020082_P004 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.08 Archaeplastida
Zm00001e035946_P001 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR032460 Symplekin/Pta1_N 101 277
No external refs found!