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  5. MA_10427237g0020

MA_10427237g0020


Description : Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana (sp|q67xl4|y3544_arath : 114.0)


Gene families : OG0001381 (Archaeplastida) Phylogenetic Tree(s): OG0001381_tree ,
OG_05_0000914 (LandPlants) Phylogenetic Tree(s): OG_05_0000914_tree ,
OG_06_0005833 (SeedPlants) Phylogenetic Tree(s): OG_06_0005833_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10427237g0020
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00218010 evm_27.TU.AmTr_v1... Uncharacterized CRM domain-containing protein At3g25440,... 0.05 Archaeplastida
Gb_39033 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.02 Archaeplastida
LOC_Os05g05300.1 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida
Pp3c3_29500V3.1 No alias RNA-binding CRS1 / YhbY (CRM) domain protein 0.02 Archaeplastida
Solyc07g047900.3.1 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.02 Archaeplastida
Zm00001e040411_P001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 151 235
No external refs found!