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  5. MA_10427747g0010

MA_10427747g0010


Description : protein factor U5-40kDa/snRNP40 of U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0006290 (Archaeplastida) Phylogenetic Tree(s): OG0006290_tree ,
OG_05_0006386 (LandPlants) Phylogenetic Tree(s): OG_05_0006386_tree ,
OG_06_0006849 (SeedPlants) Phylogenetic Tree(s): OG_06_0006849_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10427747g0010
Cluster HCCA: Cluster_337

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000718.71 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 Archaeplastida
Pp3c5_3050V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 127 161
IPR001680 WD40_repeat 2 35
IPR001680 WD40_repeat 170 211
IPR001680 WD40_repeat 41 78
No external refs found!