AT5G13930 (CHS, TT4, ATCHS)

Aliases : CHS, TT4, ATCHS

Description : Chalcone and stilbene synthase family protein

Gene families : OG0000336 (Archaeplastida) Phylogenetic Tree(s): OG0000336_tree ,
OG_05_0000154 (LandPlants) Phylogenetic Tree(s): OG_05_0000154_tree ,
OG_06_0000206 (SeedPlants) Phylogenetic Tree(s): OG_06_0000206_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G13930
Cluster	HCCA: Cluster_170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00092780	evm_27.TU.AmTr_v1...	Secondary metabolism.phenolics.flavonoid synthesis and...	0.03	Archaeplastida
GSVIVT01010563001	No alias	Secondary metabolism.phenolics.flavonoid synthesis and...	0.03	Archaeplastida
GSVIVT01032968001	No alias	Secondary metabolism.phenolics.flavonoid synthesis and...	0.14	Archaeplastida
Gb_01519	No alias	chalcone synthase	0.13	Archaeplastida
Gb_19001	No alias	Enzyme classification.EC_2 transferases.EC_2.3...	0.09	Archaeplastida
Gb_19002	No alias	chalcone synthase	0.11	Archaeplastida
Gb_19003	No alias	chalcone synthase	0.04	Archaeplastida
Gb_19005	No alias	chalcone synthase	0.08	Archaeplastida
Gb_35771	No alias	chalcone synthase	0.07	Archaeplastida
LOC_Os11g32650.1	No alias	chalcone synthase	0.03	Archaeplastida
MA_10426264g0020	No alias	chalcone synthase	0.06	Archaeplastida
MA_10428225g0010	No alias	Chalcone synthase OS=Pinus sylvestris...	0.05	Archaeplastida
MA_20764g0010	No alias	chalcone synthase	0.05	Archaeplastida
MA_5735g0010	No alias	chalcone synthase	0.05	Archaeplastida
MA_6172876g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
Mp2g07060.1	No alias	chalcone synthase	0.02	Archaeplastida
Mp4g14200.1	No alias	chalcone synthase	0.03	Archaeplastida
Mp4g14450.1	No alias	chalcone synthase	0.03	Archaeplastida
Pp3c21_20650V3.1	No alias	Chalcone and stilbene synthase family protein	0.03	Archaeplastida
Pp3c2_30620V3.1	No alias	Chalcone and stilbene synthase family protein	0.03	Archaeplastida
Pp3c2_32320V3.1	No alias	Chalcone and stilbene synthase family protein	0.03	Archaeplastida
Pp3c2_36290V3.1	No alias	Chalcone and stilbene synthase family protein	0.03	Archaeplastida
Pp3c2_36350V3.1	No alias	Chalcone and stilbene synthase family protein	0.04	Archaeplastida
Pp3c2_36410V3.1	No alias	Chalcone and stilbene synthase family protein	0.04	Archaeplastida
Solyc05g053550.3.1	No alias	chalcone synthase	0.1	Archaeplastida
Zm00001e035042_P001	No alias	Enzyme classification.EC_2 transferases.EC_2.3...	0.04	Archaeplastida
Zm00001e035046_P001	No alias	Enzyme classification.EC_2 transferases.EC_2.3...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	None	Extended
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	IEP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	RCA	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009611	response to wounding	IEP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	IMP	Interproscan
BP	GO:0009698	phenylpropanoid metabolic process	None	Extended
BP	GO:0009699	phenylpropanoid biosynthetic process	None	Extended
CC	GO:0009705	plant-type vacuole membrane	IDA	Interproscan
BP	GO:0009714	chalcone metabolic process	None	Extended
BP	GO:0009715	chalcone biosynthetic process	IMP	Interproscan
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEP	Interproscan
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Interproscan
BP	GO:0009753	response to jasmonic acid	IEP	Interproscan
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009813	flavonoid biosynthetic process	IMP	Interproscan
BP	GO:0009813	flavonoid biosynthetic process	ISS	Interproscan
BP	GO:0009813	flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009914	hormone transport	None	Extended
BP	GO:0009926	auxin polar transport	IMP	Interproscan
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010224	response to UV-B	IMP	Interproscan
BP	GO:0010224	response to UV-B	RCA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016210	naringenin-chalcone synthase activity	IMP	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	transferase activity, transferring acyl groups	None	Extended
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031537	regulation of anthocyanin metabolic process	None	Extended
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Interproscan
BP	GO:0034285	response to disaccharide	None	Extended
BP	GO:0042180	cellular ketone metabolic process	None	Extended
BP	GO:0042181	ketone biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044437	vacuolar part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0044550	secondary metabolite biosynthetic process	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046283	anthocyanin-containing compound metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0060918	auxin transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004126	cytidine deaminase activity	IEP	Neighborhood
MF	GO:0004364	glutathione transferase activity	IEP	Neighborhood
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Neighborhood
BP	GO:0006216	cytidine catabolic process	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
BP	GO:0009119	ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0009164	nucleoside catabolic process	IEP	Neighborhood
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Neighborhood
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Neighborhood
BP	GO:0009694	jasmonic acid metabolic process	IEP	Neighborhood
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	Neighborhood
BP	GO:0009801	cinnamic acid ester metabolic process	IEP	Neighborhood
BP	GO:0009808	lignin metabolic process	IEP	Neighborhood
BP	GO:0009809	lignin biosynthetic process	IEP	Neighborhood
BP	GO:0009972	cytidine deamination	IEP	Neighborhood
BP	GO:0010208	pollen wall assembly	IEP	Neighborhood
BP	GO:0010253	UDP-rhamnose biosynthetic process	IEP	Neighborhood
MF	GO:0010280	UDP-L-rhamnose synthase activity	IEP	Neighborhood
BP	GO:0010315	auxin efflux	IEP	Neighborhood
BP	GO:0010584	pollen exine formation	IEP	Neighborhood
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	Neighborhood
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	Neighborhood
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	Neighborhood
MF	GO:0016405	CoA-ligase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016621	cinnamoyl-CoA reductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
MF	GO:0016872	intramolecular lyase activity	IEP	Neighborhood
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Neighborhood
MF	GO:0016878	acid-thiol ligase activity	IEP	Neighborhood
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Neighborhood
MF	GO:0019239	deaminase activity	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
CC	GO:0031312	extrinsic component of organelle membrane	IEP	Neighborhood
BP	GO:0033478	UDP-rhamnose metabolic process	IEP	Neighborhood
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
CC	GO:0042406	extrinsic component of endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0042454	ribonucleoside catabolic process	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
MF	GO:0045430	chalcone isomerase activity	IEP	Neighborhood
MF	GO:0045431	flavonol synthase activity	IEP	Neighborhood
MF	GO:0045486	naringenin 3-dioxygenase activity	IEP	Neighborhood
BP	GO:0046087	cytidine metabolic process	IEP	Neighborhood
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	Neighborhood
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
MF	GO:0046910	pectinesterase inhibitor activity	IEP	Neighborhood
MF	GO:0047213	anthocyanidin 3-O-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0050284	sinapate 1-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0050377	UDP-glucose 4,6-dehydratase activity	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
BP	GO:0051552	flavone metabolic process	IEP	Neighborhood
BP	GO:0051553	flavone biosynthetic process	IEP	Neighborhood
BP	GO:0051554	flavonol metabolic process	IEP	Neighborhood
BP	GO:0051555	flavonol biosynthetic process	IEP	Neighborhood
MF	GO:0052636	arabinosyltransferase activity	IEP	Neighborhood
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Neighborhood
MF	GO:0080043	quercetin 3-O-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0080059	flavonol 3-O-arabinosyltransferase activity	IEP	Neighborhood
BP	GO:0080167	response to karrikin	IEP	Neighborhood
BP	GO:1900384	regulation of flavonol biosynthetic process	IEP	Neighborhood
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Neighborhood
BP	GO:1901658	glycosyl compound catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001099	Chalcone/stilbene_synthase_N	10	233
IPR012328	Chalcone/stilbene_synth_C	244	394

External Links

No external refs found!

AT5G13930 (CHS, TT4, ATCHS)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation