AT5G22650 (HD2, HDA4, HD2B,...)


Aliases : HD2, HDA4, HD2B, ATHD2B, HDT02, ATHD2, HDT2

Description : histone deacetylase 2B


Gene families : OG0001808 (Archaeplastida) Phylogenetic Tree(s): OG0001808_tree ,
OG_05_0001598 (LandPlants) Phylogenetic Tree(s): OG_05_0001598_tree ,
OG_06_0001227 (SeedPlants) Phylogenetic Tree(s): OG_06_0001227_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G22650
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
Zm00001e032246_P002 No alias histone deacetylase (HDT/HD2) 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0004407 histone deacetylase activity ISS Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005730 nucleolus TAS Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process RCA Interproscan
BP GO:0009294 DNA mediated transformation IMP Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0009944 polarity specification of adaxial/abaxial axis IMP Interproscan
BP GO:0010162 seed dormancy process IEP Interproscan
BP GO:0043687 post-translational protein modification RCA Interproscan
BP GO:0045892 negative regulation of transcription, DNA-templated IDA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000278 mitotic cell cycle IEP Neighborhood
CC GO:0000418 RNA polymerase IV complex IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003896 DNA primase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003989 acetyl-CoA carboxylase activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004633 phosphopantothenoylcysteine decarboxylase activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
CC GO:0005874 microtubule IEP Neighborhood
CC GO:0005884 actin filament IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006020 inositol metabolic process IEP Neighborhood
BP GO:0006021 inositol biosynthetic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006268 DNA unwinding involved in DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006638 neutral lipid metabolic process IEP Neighborhood
BP GO:0006639 acylglycerol metabolic process IEP Neighborhood
BP GO:0006641 triglyceride metabolic process IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007000 nucleolus organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008252 nucleotidase activity IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
BP GO:0008356 asymmetric cell division IEP Neighborhood
MF GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity IEP Neighborhood
CC GO:0008622 epsilon DNA polymerase complex IEP Neighborhood
MF GO:0008934 inositol monophosphate 1-phosphatase activity IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009799 specification of symmetry IEP Neighborhood
BP GO:0009855 determination of bilateral symmetry IEP Neighborhood
BP GO:0009934 regulation of meristem structural organization IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010073 meristem maintenance IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010332 response to gamma radiation IEP Neighborhood
MF GO:0010347 L-galactose-1-phosphate phosphatase activity IEP Neighborhood
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
BP GO:0015937 coenzyme A biosynthetic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016246 RNA interference IEP Neighborhood
MF GO:0016421 CoA carboxylase activity IEP Neighborhood
BP GO:0016441 posttranscriptional gene silencing IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019203 carbohydrate phosphatase activity IEP Neighborhood
BP GO:0019432 triglyceride biosynthetic process IEP Neighborhood
BP GO:0019852 L-ascorbic acid metabolic process IEP Neighborhood
BP GO:0019853 L-ascorbic acid biosynthetic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0031497 chromatin assembly IEP Neighborhood
BP GO:0031507 heterochromatin assembly IEP Neighborhood
BP GO:0032392 DNA geometric change IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
BP GO:0032508 DNA duplex unwinding IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035194 posttranscriptional gene silencing by RNA IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
CC GO:0042575 DNA polymerase complex IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
BP GO:0046460 neutral lipid biosynthetic process IEP Neighborhood
BP GO:0046463 acylglycerol biosynthetic process IEP Neighborhood
MF GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity IEP Neighborhood
BP GO:0048564 photosystem I assembly IEP Neighborhood
MF GO:0050308 sugar-phosphatase activity IEP Neighborhood
MF GO:0051015 actin filament binding IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
MF GO:0052745 inositol phosphate phosphatase activity IEP Neighborhood
MF GO:0052834 inositol monophosphate phosphatase activity IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0070456 galactose-1-phosphate phosphatase activity IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0070828 heterochromatin organization IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0071617 lysophospholipid acyltransferase activity IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0090056 regulation of chlorophyll metabolic process IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0099080 supramolecular complex IEP Neighborhood
CC GO:0099081 supramolecular polymer IEP Neighborhood
CC GO:0099512 supramolecular fiber IEP Neighborhood
CC GO:0099513 polymeric cytoskeletal fiber IEP Neighborhood
BP GO:1900150 regulation of defense response to fungus IEP Neighborhood
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP Neighborhood
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:2000072 regulation of defense response to fungus, incompatible interaction IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!