Aliases : HD2, HDA4, HD2B, ATHD2B, HDT02, ATHD2, HDT2
Description : histone deacetylase 2B
Gene families : OG0001808 (Archaeplastida) Phylogenetic Tree(s): OG0001808_tree ,
OG_05_0001598 (LandPlants) Phylogenetic Tree(s): OG_05_0001598_tree ,
OG_06_0001227 (SeedPlants) Phylogenetic Tree(s): OG_06_0001227_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT5G22650 | |
Cluster | HCCA: Cluster_160 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Zm00001e032246_P002 | No alias | histone deacetylase (HDT/HD2) | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001510 | RNA methylation | RCA | Interproscan |
MF | GO:0004407 | histone deacetylase activity | ISS | Interproscan |
CC | GO:0005618 | cell wall | IDA | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
CC | GO:0005730 | nucleolus | IDA | Interproscan |
CC | GO:0005730 | nucleolus | TAS | Interproscan |
CC | GO:0005739 | mitochondrion | IDA | Interproscan |
CC | GO:0005774 | vacuolar membrane | IDA | Interproscan |
CC | GO:0005829 | cytosol | IDA | Interproscan |
BP | GO:0006355 | regulation of transcription, DNA-templated | RCA | Interproscan |
BP | GO:0009220 | pyrimidine ribonucleotide biosynthetic process | RCA | Interproscan |
BP | GO:0009294 | DNA mediated transformation | IMP | Interproscan |
BP | GO:0009909 | regulation of flower development | RCA | Interproscan |
BP | GO:0009944 | polarity specification of adaxial/abaxial axis | IMP | Interproscan |
BP | GO:0010162 | seed dormancy process | IEP | Interproscan |
BP | GO:0043687 | post-translational protein modification | RCA | Interproscan |
BP | GO:0045892 | negative regulation of transcription, DNA-templated | IDA | Interproscan |
BP | GO:0045893 | positive regulation of transcription, DNA-templated | RCA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Neighborhood |
BP | GO:0000278 | mitotic cell cycle | IEP | Neighborhood |
CC | GO:0000418 | RNA polymerase IV complex | IEP | Neighborhood |
CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Neighborhood |
CC | GO:0000790 | nuclear chromatin | IEP | Neighborhood |
BP | GO:0000911 | cytokinesis by cell plate formation | IEP | Neighborhood |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Neighborhood |
MF | GO:0003896 | DNA primase activity | IEP | Neighborhood |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | Neighborhood |
MF | GO:0004576 | oligosaccharyl transferase activity | IEP | Neighborhood |
MF | GO:0004633 | phosphopantothenoylcysteine decarboxylase activity | IEP | Neighborhood |
MF | GO:0005247 | voltage-gated chloride channel activity | IEP | Neighborhood |
MF | GO:0005253 | anion channel activity | IEP | Neighborhood |
MF | GO:0005254 | chloride channel activity | IEP | Neighborhood |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
CC | GO:0005839 | proteasome core complex | IEP | Neighborhood |
CC | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex | IEP | Neighborhood |
CC | GO:0005849 | mRNA cleavage factor complex | IEP | Neighborhood |
CC | GO:0005874 | microtubule | IEP | Neighborhood |
CC | GO:0005884 | actin filament | IEP | Neighborhood |
BP | GO:0005996 | monosaccharide metabolic process | IEP | Neighborhood |
BP | GO:0006020 | inositol metabolic process | IEP | Neighborhood |
BP | GO:0006021 | inositol biosynthetic process | IEP | Neighborhood |
BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
BP | GO:0006260 | DNA replication | IEP | Neighborhood |
BP | GO:0006261 | DNA-dependent DNA replication | IEP | Neighborhood |
BP | GO:0006268 | DNA unwinding involved in DNA replication | IEP | Neighborhood |
BP | GO:0006270 | DNA replication initiation | IEP | Neighborhood |
BP | GO:0006275 | regulation of DNA replication | IEP | Neighborhood |
BP | GO:0006302 | double-strand break repair | IEP | Neighborhood |
BP | GO:0006304 | DNA modification | IEP | Neighborhood |
BP | GO:0006305 | DNA alkylation | IEP | Neighborhood |
BP | GO:0006306 | DNA methylation | IEP | Neighborhood |
BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
BP | GO:0006342 | chromatin silencing | IEP | Neighborhood |
BP | GO:0006346 | methylation-dependent chromatin silencing | IEP | Neighborhood |
BP | GO:0006378 | mRNA polyadenylation | IEP | Neighborhood |
BP | GO:0006479 | protein methylation | IEP | Neighborhood |
BP | GO:0006606 | protein import into nucleus | IEP | Neighborhood |
BP | GO:0006626 | protein targeting to mitochondrion | IEP | Neighborhood |
BP | GO:0006638 | neutral lipid metabolic process | IEP | Neighborhood |
BP | GO:0006639 | acylglycerol metabolic process | IEP | Neighborhood |
BP | GO:0006641 | triglyceride metabolic process | IEP | Neighborhood |
BP | GO:0006821 | chloride transport | IEP | Neighborhood |
BP | GO:0006839 | mitochondrial transport | IEP | Neighborhood |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Neighborhood |
BP | GO:0007000 | nucleolus organization | IEP | Neighborhood |
BP | GO:0007010 | cytoskeleton organization | IEP | Neighborhood |
BP | GO:0007017 | microtubule-based process | IEP | Neighborhood |
BP | GO:0007051 | spindle organization | IEP | Neighborhood |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
BP | GO:0008213 | protein alkylation | IEP | Neighborhood |
MF | GO:0008252 | nucleotidase activity | IEP | Neighborhood |
BP | GO:0008283 | cell proliferation | IEP | Neighborhood |
MF | GO:0008308 | voltage-gated anion channel activity | IEP | Neighborhood |
BP | GO:0008356 | asymmetric cell division | IEP | Neighborhood |
MF | GO:0008441 | 3'(2'),5'-bisphosphate nucleotidase activity | IEP | Neighborhood |
CC | GO:0008622 | epsilon DNA polymerase complex | IEP | Neighborhood |
MF | GO:0008934 | inositol monophosphate 1-phosphatase activity | IEP | Neighborhood |
BP | GO:0009560 | embryo sac egg cell differentiation | IEP | Neighborhood |
BP | GO:0009799 | specification of symmetry | IEP | Neighborhood |
BP | GO:0009855 | determination of bilateral symmetry | IEP | Neighborhood |
BP | GO:0009934 | regulation of meristem structural organization | IEP | Neighborhood |
BP | GO:0010014 | meristem initiation | IEP | Neighborhood |
BP | GO:0010073 | meristem maintenance | IEP | Neighborhood |
MF | GO:0010181 | FMN binding | IEP | Neighborhood |
BP | GO:0010212 | response to ionizing radiation | IEP | Neighborhood |
BP | GO:0010332 | response to gamma radiation | IEP | Neighborhood |
MF | GO:0010347 | L-galactose-1-phosphate phosphatase activity | IEP | Neighborhood |
BP | GO:0010380 | regulation of chlorophyll biosynthetic process | IEP | Neighborhood |
BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Neighborhood |
MF | GO:0015108 | chloride transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0015936 | coenzyme A metabolic process | IEP | Neighborhood |
BP | GO:0015937 | coenzyme A biosynthetic process | IEP | Neighborhood |
BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
BP | GO:0016246 | RNA interference | IEP | Neighborhood |
MF | GO:0016421 | CoA carboxylase activity | IEP | Neighborhood |
BP | GO:0016441 | posttranscriptional gene silencing | IEP | Neighborhood |
BP | GO:0016458 | gene silencing | IEP | Neighborhood |
BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
BP | GO:0016570 | histone modification | IEP | Neighborhood |
BP | GO:0016571 | histone methylation | IEP | Neighborhood |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | Neighborhood |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
MF | GO:0019203 | carbohydrate phosphatase activity | IEP | Neighborhood |
BP | GO:0019432 | triglyceride biosynthetic process | IEP | Neighborhood |
BP | GO:0019852 | L-ascorbic acid metabolic process | IEP | Neighborhood |
BP | GO:0019853 | L-ascorbic acid biosynthetic process | IEP | Neighborhood |
BP | GO:0022402 | cell cycle process | IEP | Neighborhood |
BP | GO:0022412 | cellular process involved in reproduction in multicellular organism | IEP | Neighborhood |
BP | GO:0022607 | cellular component assembly | IEP | Neighborhood |
CC | GO:0030880 | RNA polymerase complex | IEP | Neighborhood |
BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
BP | GO:0031048 | chromatin silencing by small RNA | IEP | Neighborhood |
BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Neighborhood |
BP | GO:0031497 | chromatin assembly | IEP | Neighborhood |
BP | GO:0031507 | heterochromatin assembly | IEP | Neighborhood |
BP | GO:0032392 | DNA geometric change | IEP | Neighborhood |
BP | GO:0032506 | cytokinetic process | IEP | Neighborhood |
BP | GO:0032508 | DNA duplex unwinding | IEP | Neighborhood |
BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | Neighborhood |
BP | GO:0033866 | nucleoside bisphosphate biosynthetic process | IEP | Neighborhood |
BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | Neighborhood |
BP | GO:0034030 | ribonucleoside bisphosphate biosynthetic process | IEP | Neighborhood |
BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | Neighborhood |
BP | GO:0034033 | purine nucleoside bisphosphate biosynthetic process | IEP | Neighborhood |
MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
BP | GO:0034504 | protein localization to nucleus | IEP | Neighborhood |
BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
BP | GO:0035194 | posttranscriptional gene silencing by RNA | IEP | Neighborhood |
BP | GO:0040029 | regulation of gene expression, epigenetic | IEP | Neighborhood |
CC | GO:0042575 | DNA polymerase complex | IEP | Neighborhood |
BP | GO:0043631 | RNA polyadenylation | IEP | Neighborhood |
CC | GO:0044427 | chromosomal part | IEP | Neighborhood |
CC | GO:0044430 | cytoskeletal part | IEP | Neighborhood |
CC | GO:0044454 | nuclear chromosome part | IEP | Neighborhood |
BP | GO:0044728 | DNA methylation or demethylation | IEP | Neighborhood |
BP | GO:0045814 | negative regulation of gene expression, epigenetic | IEP | Neighborhood |
BP | GO:0046364 | monosaccharide biosynthetic process | IEP | Neighborhood |
BP | GO:0046460 | neutral lipid biosynthetic process | IEP | Neighborhood |
BP | GO:0046463 | acylglycerol biosynthetic process | IEP | Neighborhood |
MF | GO:0047184 | 1-acylglycerophosphocholine O-acyltransferase activity | IEP | Neighborhood |
BP | GO:0048564 | photosystem I assembly | IEP | Neighborhood |
MF | GO:0050308 | sugar-phosphatase activity | IEP | Neighborhood |
MF | GO:0051015 | actin filament binding | IEP | Neighborhood |
BP | GO:0051026 | chiasma assembly | IEP | Neighborhood |
BP | GO:0051052 | regulation of DNA metabolic process | IEP | Neighborhood |
BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
BP | GO:0051170 | import into nucleus | IEP | Neighborhood |
BP | GO:0051225 | spindle assembly | IEP | Neighborhood |
BP | GO:0051258 | protein polymerization | IEP | Neighborhood |
BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
BP | GO:0051301 | cell division | IEP | Neighborhood |
BP | GO:0051567 | histone H3-K9 methylation | IEP | Neighborhood |
BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Neighborhood |
BP | GO:0051726 | regulation of cell cycle | IEP | Neighborhood |
MF | GO:0052745 | inositol phosphate phosphatase activity | IEP | Neighborhood |
MF | GO:0052834 | inositol monophosphate phosphatase activity | IEP | Neighborhood |
CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | Neighborhood |
BP | GO:0061647 | histone H3-K9 modification | IEP | Neighborhood |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Neighborhood |
MF | GO:0070456 | galactose-1-phosphate phosphatase activity | IEP | Neighborhood |
BP | GO:0070585 | protein localization to mitochondrion | IEP | Neighborhood |
BP | GO:0070828 | heterochromatin organization | IEP | Neighborhood |
BP | GO:0070925 | organelle assembly | IEP | Neighborhood |
BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
MF | GO:0071617 | lysophospholipid acyltransferase activity | IEP | Neighborhood |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | Neighborhood |
BP | GO:0090056 | regulation of chlorophyll metabolic process | IEP | Neighborhood |
MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
CC | GO:0099080 | supramolecular complex | IEP | Neighborhood |
CC | GO:0099081 | supramolecular polymer | IEP | Neighborhood |
CC | GO:0099512 | supramolecular fiber | IEP | Neighborhood |
CC | GO:0099513 | polymeric cytoskeletal fiber | IEP | Neighborhood |
BP | GO:1900150 | regulation of defense response to fungus | IEP | Neighborhood |
BP | GO:1901401 | regulation of tetrapyrrole metabolic process | IEP | Neighborhood |
BP | GO:1901463 | regulation of tetrapyrrole biosynthetic process | IEP | Neighborhood |
BP | GO:1902410 | mitotic cytokinetic process | IEP | Neighborhood |
BP | GO:1903047 | mitotic cell cycle process | IEP | Neighborhood |
BP | GO:2000072 | regulation of defense response to fungus, incompatible interaction | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |