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  5. AT5G22680

AT5G22680


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G22720.2); Has 65 Blast hits to 64 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0001957 (Archaeplastida) Phylogenetic Tree(s): OG0001957_tree ,
OG_05_0001277 (LandPlants) Phylogenetic Tree(s): OG_05_0001277_tree ,
OG_06_0000660 (SeedPlants) Phylogenetic Tree(s): OG_06_0000660_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G22680
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT1G32020 No alias F-box family protein 0.03 Archaeplastida
AT1G60400 No alias F-box/RNI-like superfamily protein 0.03 Archaeplastida
AT1G66290 No alias F-box/RNI-like superfamily protein 0.03 Archaeplastida
AT1G66320 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT1G66640 No alias RNI-like superfamily protein 0.04 Archaeplastida
AT1G78750 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT5G22590 No alias Leucine Rich Repeat protein family 0.04 Archaeplastida
AT5G22660 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.04 Archaeplastida
AT5G22670 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida
AT5G25850 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT5G44940 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT5G44950 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT5G44970 No alias Protein with RNI-like/FBD-like domains 0.04 Archaeplastida
AT5G44980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT5G53635 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
CC GO:0005851 eukaryotic translation initiation factor 2B complex IEP Neighborhood
BP GO:0006446 regulation of translational initiation IEP Neighborhood
BP GO:0007065 male meiosis sister chromatid cohesion IEP Neighborhood
BP GO:0007066 female meiosis sister chromatid cohesion IEP Neighborhood
BP GO:0009704 de-etiolation IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0017148 negative regulation of translation IEP Neighborhood
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0045947 negative regulation of translational initiation IEP Neighborhood
BP GO:0051177 meiotic sister chromatid cohesion IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!