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  5. MA_12211g0010

MA_12211g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 538.0)


Gene families : OG0021077 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0020787 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0020059 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_12211g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
AT2G35030 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
Gb_25554 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 140 172
IPR002885 Pentatricopeptide_repeat 174 202
IPR002885 Pentatricopeptide_repeat 383 407
IPR002885 Pentatricopeptide_repeat 449 477
IPR032867 DYW_dom 481 605
IPR002885 Pentatricopeptide_repeat 308 355
IPR002885 Pentatricopeptide_repeat 65 117
IPR002885 Pentatricopeptide_repeat 206 252
No external refs found!