Description : nuclear-encoded organellar RNA polymerase (NEP)
Gene families : OG0002772 (Archaeplastida) Phylogenetic Tree(s): OG0002772_tree ,
OG_05_0002615 (LandPlants) Phylogenetic Tree(s): OG_05_0002615_tree ,
OG_06_0003081 (SeedPlants) Phylogenetic Tree(s): OG_06_0003081_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_122415g0010 | |
Cluster | HCCA: Cluster_238 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G68990 | MGP3 | male gametophyte defective 3 | 0.02 | Archaeplastida | |
AT5G15700 | No alias | DNA/RNA polymerases superfamily protein | 0.03 | Archaeplastida | |
Cre02.g075600 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.02 | Archaeplastida | |
LOC_Os09g07120.1 | No alias | nuclear-encoded organellar RNA polymerase (NEP) | 0.02 | Archaeplastida | |
Pp3c12_4010V3.1 | No alias | DNA/RNA polymerases superfamily protein | 0.02 | Archaeplastida | |
Pp3c26_6450V3.1 | No alias | DNA/RNA polymerases superfamily protein | 0.05 | Archaeplastida | |
Solyc05g010660.4.1 | No alias | nuclear-encoded organellar RNA polymerase (NEP) | 0.04 | Archaeplastida | |
Zm00001e035572_P001 | No alias | nuclear-encoded organellar RNA polymerase (NEP) | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | transcription, DNA-templated | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Neighborhood |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
BP | GO:0006497 | protein lipidation | IEP | Neighborhood |
BP | GO:0006505 | GPI anchor metabolic process | IEP | Neighborhood |
BP | GO:0006506 | GPI anchor biosynthetic process | IEP | Neighborhood |
BP | GO:0006643 | membrane lipid metabolic process | IEP | Neighborhood |
BP | GO:0006644 | phospholipid metabolic process | IEP | Neighborhood |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Neighborhood |
BP | GO:0006661 | phosphatidylinositol biosynthetic process | IEP | Neighborhood |
BP | GO:0006664 | glycolipid metabolic process | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
BP | GO:0008654 | phospholipid biosynthetic process | IEP | Neighborhood |
BP | GO:0009247 | glycolipid biosynthetic process | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044432 | endoplasmic reticulum part | IEP | Neighborhood |
CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
BP | GO:0045017 | glycerolipid biosynthetic process | IEP | Neighborhood |
BP | GO:0046467 | membrane lipid biosynthetic process | IEP | Neighborhood |
BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | Neighborhood |
BP | GO:0046486 | glycerolipid metabolic process | IEP | Neighborhood |
BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Neighborhood |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | Neighborhood |
BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | Neighborhood |
BP | GO:1903509 | liposaccharide metabolic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002092 | DNA-dir_Rpol_phage-type | 3 | 104 |
No external refs found! |