MA_13101g0020

Description : component RPL40 of LSU proteome component

Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0000087 (SeedPlants) Phylogenetic Tree(s): OG_06_0000087_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_13101g0020
Cluster	HCCA: Cluster_208

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00094950	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.13	Archaeplastida
AMTR_s00040p00104050	evm_27.TU.AmTr_v1...	Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris	0.05	Archaeplastida
AMTR_s00095p00146440	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
AT1G23410	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.05	Archaeplastida
AT2G36170	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.24	Archaeplastida
AT2G47110	UBQ6	ubiquitin 6	0.22	Archaeplastida
AT3G52590	UBQ1, EMB2167,...	ubiquitin extension protein 1	0.24	Archaeplastida
AT3G62250	UBQ5	ubiquitin 5	0.18	Archaeplastida
Cpa\|evm.model.tig00022075.50	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
Cre01.g007051	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
Cre06.g273600	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.24	Archaeplastida
GSVIVT01012906001	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.1	Archaeplastida
GSVIVT01022543001	No alias	Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum	0.11	Archaeplastida
GSVIVT01028198001	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.13	Archaeplastida
GSVIVT01033876001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	Archaeplastida
GSVIVT01038617001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.23	Archaeplastida
Gb_01257	No alias	component RPL40 of LSU proteome component	0.04	Archaeplastida
Gb_15027	No alias	component RPS27a of SSU proteome	0.16	Archaeplastida
Gb_40288	No alias	component RPS27a of SSU proteome	0.13	Archaeplastida
Gb_41257	No alias	component RPL40 of LSU proteome component	0.16	Archaeplastida
LOC_Os01g22490.1	No alias	component RPS27a of SSU proteome	0.1	Archaeplastida
LOC_Os03g13170.1	No alias	component RPL40 of LSU proteome component	0.11	Archaeplastida
LOC_Os05g06770.1	No alias	component RPS27a of SSU proteome	0.06	Archaeplastida
LOC_Os09g31019.1	No alias	component RPL40 of LSU proteome component	0.03	Archaeplastida
LOC_Os09g39500.1	No alias	component RPL40 of LSU proteome component	0.09	Archaeplastida
Mp7g12760.1	No alias	component RPS27a of SSU proteome	0.07	Archaeplastida
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.19	Archaeplastida
Pp3c10_25270V3.1	No alias	ubiquitin extension protein 1	0.21	Archaeplastida
Pp3c12_5640V3.1	No alias	ubiquitin 6	0.16	Archaeplastida
Pp3c12_5760V3.1	No alias	ubiquitin 6	0.19	Archaeplastida
Pp3c20_23170V3.1	No alias	ubiquitin extension protein 1	0.26	Archaeplastida
Pp3c24_430V3.1	No alias	ubiquitin extension protein 1	0.18	Archaeplastida
Pp3c3_25480V3.1	No alias	ubiquitin extension protein 1	0.21	Archaeplastida
Pp3c4_11930V3.1	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.14	Archaeplastida
Pp3c4_19000V3.1	No alias	ubiquitin 6	0.25	Archaeplastida
Pp3c8_14230V3.1	No alias	ubiquitin 6	0.18	Archaeplastida
Smo111605	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
Smo93613	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.06	Archaeplastida
Solyc01g068045.1.1	No alias	component RPS27a of SSU proteome	0.14	Archaeplastida
Solyc01g096290.4.1	No alias	no hits & (original description: none)	0.13	Archaeplastida
Solyc03g082570.4.1	No alias	component RPL40 of LSU proteome component	0.2	Archaeplastida
Solyc08g008590.4.1	No alias	component RPL40 of LSU proteome component	0.07	Archaeplastida
Solyc08g083120.3.1	No alias	component RPL40 of LSU proteome component	0.23	Archaeplastida
Solyc12g098940.2.1	No alias	component RPS27a of SSU proteome	0.1	Archaeplastida
Solyc12g099025.1.1	No alias	component RPS27a of SSU proteome	0.11	Archaeplastida
Zm00001e000962_P001	No alias	component RPL40 of LSU proteome component	0.12	Archaeplastida
Zm00001e009474_P001	No alias	component RPL40 of LSU proteome component	0.09	Archaeplastida
Zm00001e026237_P001	No alias	component RPS27a of SSU proteome	0.21	Archaeplastida
Zm00001e028916_P001	No alias	component RPS27a of SSU proteome	0.14	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
CC	GO:0032993	protein-DNA complex	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044815	DNA packaging complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin_dom	3	74
IPR001975	Ribosomal_L40e	78	127

External Links

No external refs found!

MA_13101g0020

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation