MA_169369g0010


Description : Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana (sp|q9fgr0|cpsf1_arath : 329.0)


Gene families : OG0003000 (Archaeplastida) Phylogenetic Tree(s): OG0003000_tree ,
OG_05_0006246 (LandPlants) Phylogenetic Tree(s): OG_05_0006246_tree ,
OG_06_0006593 (SeedPlants) Phylogenetic Tree(s): OG_06_0006593_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_169369g0010
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00037520 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
AT5G51660 ATCPSF160, CPSF160 cleavage and polyadenylation specificity factor 160 0.04 Archaeplastida
Cre13.g573450 No alias Probable cleavage and polyadenylation specificity factor... 0.02 Archaeplastida
GSVIVT01018506001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
Gb_25540 No alias no hits & (original description: none) 0.01 Archaeplastida
Gb_25541 No alias Cleavage and polyadenylation specificity factor subunit... 0.02 Archaeplastida
LOC_Os04g18010.1 No alias component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
MA_64261g0010 No alias Probable cleavage and polyadenylation specificity factor... 0.05 Archaeplastida
Pp3c11_8810V3.1 No alias cleavage and polyadenylation specificity factor 160 0.03 Archaeplastida
Smo82277 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.08 Archaeplastida
Solyc03g007100.3.1 No alias component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.08 Archaeplastida
Zm00001e008515_P003 No alias component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!