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  5. MA_19196g0010

MA_19196g0010


Description : pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0004723 (SeedPlants) Phylogenetic Tree(s): OG_06_0004723_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_19196g0010
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AT2G36710 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G19730 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G26810 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01013839001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01014641001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_17798 No alias pectin methylesterase 0.04 Archaeplastida
Gb_23209 No alias pectin methylesterase 0.02 Archaeplastida
Gb_27225 No alias pectin methylesterase 0.02 Archaeplastida
Gb_32012 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g44340.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os11g45730.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_18650V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c10_19460V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c16_6660V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Solyc01g079180.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc02g075620.4.1 No alias pectin methylesterase 0.01 Archaeplastida
Solyc04g080530.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc08g078640.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc09g091730.4.1 No alias pectin methylesterase 0.01 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e035522_P001 No alias pectin methylesterase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0018580 nitronate monooxygenase activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 2 188
No external refs found!