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  5. AT5G42450

AT5G42450


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0012932 (Archaeplastida) Phylogenetic Tree(s): OG0012932_tree ,
OG_05_0012884 (LandPlants) Phylogenetic Tree(s): OG_05_0012884_tree ,
OG_06_0012910 (SeedPlants) Phylogenetic Tree(s): OG_06_0012910_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G42450
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g62220.1 No alias Pentatricopeptide repeat-containing protein At5g42450,... 0.03 Archaeplastida
Solyc09g005710.3.1 No alias Pentatricopeptide repeat-containing protein At5g42450,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003756 protein disulfide isomerase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005261 cation channel activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006598 polyamine catabolic process IEP Neighborhood
BP GO:0006817 phosphate ion transport IEP Neighborhood
BP GO:0006997 nucleus organization IEP Neighborhood
BP GO:0007000 nucleolus organization IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
BP GO:0008300 isoprenoid catabolic process IEP Neighborhood
BP GO:0009799 specification of symmetry IEP Neighborhood
BP GO:0009806 lignan metabolic process IEP Neighborhood
BP GO:0009807 lignan biosynthetic process IEP Neighborhood
BP GO:0009855 determination of bilateral symmetry IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010075 regulation of meristem growth IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
CC GO:0015630 microtubule cytoskeleton IEP Neighborhood
BP GO:0016103 diterpenoid catabolic process IEP Neighborhood
BP GO:0016115 terpenoid catabolic process IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030551 cyclic nucleotide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031935 regulation of chromatin silencing IEP Neighborhood
BP GO:0031937 positive regulation of chromatin silencing IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0042447 hormone catabolic process IEP Neighborhood
BP GO:0045487 gibberellin catabolic process IEP Neighborhood
MF GO:0045543 gibberellin 2-beta-dioxygenase activity IEP Neighborhood
BP GO:0048364 root development IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0051054 positive regulation of DNA metabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
MF GO:0052634 C-19 gibberellin 2-beta-dioxygenase activity IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0060968 regulation of gene silencing IEP Neighborhood
BP GO:0065001 specification of axis polarity IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090308 regulation of methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0090309 positive regulation of methylation-dependent chromatin silencing IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902275 regulation of chromatin organization IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1905269 positive regulation of chromatin organization IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
BP GO:2001252 positive regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 294 336
IPR002885 Pentatricopeptide_repeat 189 235
IPR002885 Pentatricopeptide_repeat 372 395
IPR002885 Pentatricopeptide_repeat 264 291
No external refs found!