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  5. AT5G42797

AT5G42797 (LCR28)


Aliases : LCR28

Description : low-molecular-weight cysteine-rich 28


Gene families : OG0009463 (Archaeplastida) Phylogenetic Tree(s): OG0009463_tree ,
OG_05_0009493 (LandPlants) Phylogenetic Tree(s): OG_05_0009493_tree ,
OG_06_0007071 (SeedPlants) Phylogenetic Tree(s): OG_06_0007071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G42797
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT3G20993 LCR56 low-molecular-weight cysteine-rich 56 0.05 Archaeplastida
AT3G61172 LCR8 low-molecular-weight cysteine-rich 8 0.04 Archaeplastida
AT3G61182 LCR54 low-molecular-weight cysteine-rich 54 0.05 Archaeplastida
AT5G47075 LCR20 low-molecular-weight cysteine-rich 20 0.06 Archaeplastida
AT5G47175 LCR3 low-molecular-weight cysteine-rich 3 0.06 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEP Neighborhood
MF GO:0003886 DNA (cytosine-5-)-methyltransferase activity IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0009008 DNA-methyltransferase activity IEP Neighborhood
BP GO:0009299 mRNA transcription IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
CC GO:0031350 intrinsic component of plastid membrane IEP Neighborhood
CC GO:0031351 integral component of plastid membrane IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0051645 Golgi localization IEP Neighborhood
BP GO:0051646 mitochondrion localization IEP Neighborhood
BP GO:0060151 peroxisome localization IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR010851 SLR1_pollen-bd 29 81
No external refs found!