MA_25342g0010

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_25342g0010
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00010p00214260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00071p00193200	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT2G45650	AGL6	AGAMOUS-like 6	0.03	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G09960	STK, AGL11	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT4G24540	AGL24	AGAMOUS-like 24	0.03	Archaeplastida
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01008560001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.07	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01019883001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01022182001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01026207001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Gb_12586	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_16301	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Gb_28337	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.02	Archaeplastida
LOC_Os01g10504.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os02g07430.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os02g36924.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g11614.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os04g49150.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os05g34940.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os08g38590.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os10g39130.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os12g10540.3	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_10434339g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.04	Archaeplastida
MA_44428g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_629987g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.04	Archaeplastida
Pp3c8_6920V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Pp3c9_1370V3.1	No alias	AGAMOUS-like 66	0.03	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.03	Archaeplastida
Solyc02g091550.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc03g114840.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e003667_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e013738_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e016529_P004	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e038096_P002	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
BP	GO:0016567	protein ubiquitination	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0032446	protein modification by small protein conjugation	IEP	Neighborhood
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	85	151

External Links

No external refs found!

MA_25342g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation