AT5G44340 (TUB4)

Aliases : TUB4

Description : tubulin beta chain 4

Gene families : OG0000156 (Archaeplastida) Phylogenetic Tree(s): OG0000156_tree ,
OG_05_0000074 (LandPlants) Phylogenetic Tree(s): OG_05_0000074_tree ,
OG_06_0000065 (SeedPlants) Phylogenetic Tree(s): OG_06_0000065_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G44340
Cluster	HCCA: Cluster_259

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00251790	evm_27.TU.AmTr_v1...	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	Archaeplastida
AMTR_s00009p00255970	evm_27.TU.AmTr_v1...	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	Archaeplastida
AMTR_s00032p00056500	evm_27.TU.AmTr_v1...	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.05	Archaeplastida
Cpa\|evm.model.tig00001067.14	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.01	Archaeplastida
Cpa\|evm.model.tig00001067.6	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.01	Archaeplastida
Cre12.g542250	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	Archaeplastida
Cre12.g549550	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.04	Archaeplastida
GSVIVT01019758001	No alias	Tubulin beta-4 chain OS=Eleusine indica	0.07	Archaeplastida
GSVIVT01021707001	No alias	Tubulin beta chain (Fragment) OS=Glycine max	0.1	Archaeplastida
GSVIVT01025778001	No alias	Tubulin beta-4 chain OS=Eleusine indica	0.05	Archaeplastida
Gb_15590	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Gb_22609	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Gb_25332	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Gb_28116	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Gb_32830	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
LOC_Os05g34170.2	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
MA_10431251g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	Archaeplastida
MA_55439g0010	No alias	Tubulin beta-1 chain OS=Solanum tuberosum...	0.02	Archaeplastida
MA_7436374g0010	No alias	Tubulin beta-6 chain OS=Zea mays (sp\|q41783\|tbb6_maize : 276.0)	0.02	Archaeplastida
MA_79708g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
MA_8976798g0010	No alias	Tubulin beta-1 chain OS=Zea mays (sp\|p18025\|tbb1_maize : 97.8)	0.09	Archaeplastida
MA_9578301g0010	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.05	Archaeplastida
Mp1g20730.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Mp2g09390.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Mp2g16780.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Pp3c21_17300V3.1	No alias	tubulin beta chain 2	0.03	Archaeplastida
Pp3c5_20340V3.1	No alias	tubulin beta chain 2	0.04	Archaeplastida
Pp3c5_20690V3.1	No alias	tubulin beta 8	0.02	Archaeplastida
Pp3c6_7500V3.1	No alias	tubulin beta 8	0.05	Archaeplastida
Pp3c8_2420V3.1	No alias	tubulin beta chain 2	0.01	Archaeplastida
Smo138663	No alias	Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii	0.03	Archaeplastida
Smo164404	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Smo23403	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	Archaeplastida
Smo23429	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.05	Archaeplastida
Smo402668	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Smo410535	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Smo73284	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	Archaeplastida
Solyc04g081490.3.1	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.08	Archaeplastida
Zm00001e011926_P001	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.09	Archaeplastida
Zm00001e012336_P001	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida
Zm00001e019525_P002	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.05	Archaeplastida
Zm00001e025464_P001	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	Archaeplastida
Zm00001e028896_P004	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.07	Archaeplastida
Zm00001e030351_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e037773_P002	No alias	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005200	structural constituent of cytoskeleton	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044430	cytoskeletal part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0045298	tubulin complex	ISS	Interproscan
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
MF	GO:0004758	serine C-palmitoyltransferase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005635	nuclear envelope	IEP	Neighborhood
CC	GO:0005773	vacuole	IEP	Neighborhood
CC	GO:0005774	vacuolar membrane	IEP	Neighborhood
CC	GO:0005874	microtubule	IEP	Neighborhood
BP	GO:0006084	acetyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006637	acyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0006665	sphingolipid metabolic process	IEP	Neighborhood
BP	GO:0006670	sphingosine metabolic process	IEP	Neighborhood
BP	GO:0006732	coenzyme metabolic process	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009259	ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009629	response to gravity	IEP	Neighborhood
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	Neighborhood
BP	GO:0010212	response to ionizing radiation	IEP	Neighborhood
BP	GO:0010225	response to UV-C	IEP	Neighborhood
BP	GO:0010332	response to gamma radiation	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
MF	GO:0016408	C-acyltransferase activity	IEP	Neighborhood
MF	GO:0016409	palmitoyltransferase activity	IEP	Neighborhood
MF	GO:0016454	C-palmitoyltransferase activity	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
BP	GO:0019693	ribose phosphate metabolic process	IEP	Neighborhood
BP	GO:0030148	sphingolipid biosynthetic process	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034311	diol metabolic process	IEP	Neighborhood
BP	GO:0034312	diol biosynthetic process	IEP	Neighborhood
BP	GO:0035383	thioester metabolic process	IEP	Neighborhood
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044437	vacuolar part	IEP	Neighborhood
MF	GO:0045309	protein phosphorylated amino acid binding	IEP	Neighborhood
BP	GO:0046173	polyol biosynthetic process	IEP	Neighborhood
BP	GO:0046512	sphingosine biosynthetic process	IEP	Neighborhood
BP	GO:0046519	sphingoid metabolic process	IEP	Neighborhood
BP	GO:0046520	sphingoid biosynthetic process	IEP	Neighborhood
BP	GO:0048868	pollen tube development	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
MF	GO:0051219	phosphoprotein binding	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0071214	cellular response to abiotic stimulus	IEP	Neighborhood
BP	GO:0071258	cellular response to gravity	IEP	Neighborhood
BP	GO:0072521	purine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0097164	ammonium ion metabolic process	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
CC	GO:0099080	supramolecular complex	IEP	Neighborhood
CC	GO:0099081	supramolecular polymer	IEP	Neighborhood
CC	GO:0099512	supramolecular fiber	IEP	Neighborhood
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	Neighborhood
BP	GO:0104004	cellular response to environmental stimulus	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003008	Tubulin_FtsZ_GTPase	3	211
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	261	382

External Links

No external refs found!

AT5G44340 (TUB4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation