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  5. AT5G45150

AT5G45150 (RTL3)


Aliases : RTL3

Description : RNAse THREE-like protein 3


Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0001704 (LandPlants) Phylogenetic Tree(s): OG_05_0001704_tree ,
OG_06_0001136 (SeedPlants) Phylogenetic Tree(s): OG_06_0001136_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G45150
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00127000 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 Archaeplastida
AT4G15417 ATRTL1, RTL1 RNAse II-like 1 0.04 Archaeplastida
Gb_34767 No alias endoribonuclease (DCL3). endoribonuclease (DCL4) 0.02 Archaeplastida
Smo448444 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 Archaeplastida
Smo84784 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
Solyc08g067210.3.1 No alias endoribonuclease (DCL3) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding ISS Interproscan
MF GO:0004525 ribonuclease III activity ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP Neighborhood
CC GO:0000791 euchromatin IEP Neighborhood
CC GO:0000795 synaptonemal complex IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006268 DNA unwinding involved in DNA replication IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
BP GO:0009956 radial pattern formation IEP Neighborhood
BP GO:0010018 far-red light signaling pathway IEP Neighborhood
BP GO:0010496 intercellular transport IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
BP GO:0032392 DNA geometric change IEP Neighborhood
BP GO:0032508 DNA duplex unwinding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0042753 positive regulation of circadian rhythm IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0048700 acquisition of desiccation tolerance in seed IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071490 cellular response to far red light IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0090057 root radial pattern formation IEP Neighborhood
BP GO:0090351 seedling development IEP Neighborhood
BP GO:0097439 acquisition of desiccation tolerance IEP Neighborhood
CC GO:0099086 synaptonemal structure IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR014720 dsRBD_dom 585 643
IPR000999 RNase_III_dom 33 140
IPR000999 RNase_III_dom 447 549
No external refs found!