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  5. MA_3280g0020

MA_3280g0020


Description : component RNPS1 of RNA quality control Exon Junction complex


Gene families : OG0003818 (Archaeplastida) Phylogenetic Tree(s): OG0003818_tree ,
OG_05_0002920 (LandPlants) Phylogenetic Tree(s): OG_05_0002920_tree ,
OG_06_0004355 (SeedPlants) Phylogenetic Tree(s): OG_06_0004355_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_3280g0020
Cluster HCCA: Cluster_393

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021222.7 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
Gb_14226 No alias component RNPS1 of RNA quality control Exon Junction complex 0.02 Archaeplastida
Mp4g11580.1 No alias component RNPS1 of RNA quality control Exon Junction complex 0.01 Archaeplastida
Solyc10g005590.4.1 No alias component RNPS1 of RNA quality control Exon Junction complex 0.02 Archaeplastida
Zm00001e028289_P001 No alias component RNPS1 of RNA quality control Exon Junction complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990316 Atg1/ULK1 kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 143 210
No external refs found!