Description : helicase Prp43 of Intron-Lariat Spliceosome complex
Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0003517 (LandPlants) Phylogenetic Tree(s): OG_05_0003517_tree ,
OG_06_0003536 (SeedPlants) Phylogenetic Tree(s): OG_06_0003536_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_34468g0010 | |
Cluster | HCCA: Cluster_412 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00019p00154740 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.spliceosome... | 0.02 | Archaeplastida | |
AMTR_s00110p00073830 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.spliceosome... | 0.03 | Archaeplastida | |
AT1G26370 | No alias | RNA helicase family protein | 0.03 | Archaeplastida | |
AT2G47250 | No alias | RNA helicase family protein | 0.02 | Archaeplastida | |
AT5G13010 | EMB3011 | RNA helicase family protein | 0.02 | Archaeplastida | |
Cre07.g349100 | No alias | RNA processing.RNA splicing.spliceosome... | 0.02 | Archaeplastida | |
GSVIVT01003434001 | No alias | ATP-dependent RNA helicase DEAH11, chloroplastic... | 0.03 | Archaeplastida | |
GSVIVT01028153001 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | Archaeplastida | |
Gb_11931 | No alias | RNA helicase (Prp22) | 0.02 | Archaeplastida | |
Gb_22388 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.03 | Archaeplastida | |
LOC_Os01g11370.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | Archaeplastida | |
LOC_Os02g19860.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | Archaeplastida | |
LOC_Os07g32430.1 | No alias | RNA helicase (Prp16) | 0.02 | Archaeplastida | |
Mp7g01000.1 | No alias | E3 ubiquitin ligase (RBR-Helicase) | 0.02 | Archaeplastida | |
Mp7g03460.1 | No alias | RNA helicase (Prp16) | 0.02 | Archaeplastida | |
Pp3c1_18490V3.1 | No alias | RNA helicase family protein | 0.03 | Archaeplastida | |
Pp3c9_18320V3.1 | No alias | RNA helicase family protein | 0.02 | Archaeplastida | |
Solyc03g115390.4.1 | No alias | RNA helicase (Prp2) | 0.04 | Archaeplastida | |
Solyc11g010310.2.1 | No alias | E3 ubiquitin ligase (RBR-Helicase) | 0.02 | Archaeplastida | |
Zm00001e001487_P003 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.03 | Archaeplastida | |
Zm00001e014112_P001 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | Archaeplastida | |
Zm00001e022095_P001 | No alias | RNA helicase (Prp2) | 0.02 | Archaeplastida | |
Zm00001e035576_P001 | No alias | E3 ubiquitin ligase (RBR-Helicase) | 0.02 | Archaeplastida | |
Zm00001e036358_P005 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Neighborhood |
MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
CC | GO:0005667 | transcription factor complex | IEP | Neighborhood |
BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
CC | GO:0030684 | preribosome | IEP | Neighborhood |
CC | GO:0032040 | small-subunit processome | IEP | Neighborhood |
BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
MF | GO:0061505 | DNA topoisomerase II activity | IEP | Neighborhood |
BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
No external refs found! |