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  5. MA_34468g0010

MA_34468g0010


Description : helicase Prp43 of Intron-Lariat Spliceosome complex


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0003517 (LandPlants) Phylogenetic Tree(s): OG_05_0003517_tree ,
OG_06_0003536 (SeedPlants) Phylogenetic Tree(s): OG_06_0003536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_34468g0010
Cluster HCCA: Cluster_412

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00154740 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
AMTR_s00110p00073830 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
AT1G26370 No alias RNA helicase family protein 0.03 Archaeplastida
AT2G47250 No alias RNA helicase family protein 0.02 Archaeplastida
AT5G13010 EMB3011 RNA helicase family protein 0.02 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
GSVIVT01003434001 No alias ATP-dependent RNA helicase DEAH11, chloroplastic... 0.03 Archaeplastida
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Gb_11931 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Gb_22388 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os02g19860.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os07g32430.1 No alias RNA helicase (Prp16) 0.02 Archaeplastida
Mp7g01000.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
Mp7g03460.1 No alias RNA helicase (Prp16) 0.02 Archaeplastida
Pp3c1_18490V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c9_18320V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Solyc03g115390.4.1 No alias RNA helicase (Prp2) 0.04 Archaeplastida
Solyc11g010310.2.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
Zm00001e001487_P003 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Zm00001e022095_P001 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Zm00001e035576_P001 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
Zm00001e036358_P005 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 454 542
IPR011545 DEAD/DEAH_box_helicase_dom 61 213
IPR001650 Helicase_C 258 391
IPR011709 DUF1605 604 680
No external refs found!