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  5. MA_35442g0010

MA_35442g0010


Description : RNA editing factor (SLO2)


Gene families : OG0011027 (Archaeplastida) Phylogenetic Tree(s): OG0011027_tree ,
OG_05_0010980 (LandPlants) Phylogenetic Tree(s): OG_05_0010980_tree ,
OG_06_0010967 (SeedPlants) Phylogenetic Tree(s): OG_06_0010967_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_35442g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Gb_00409 No alias RNA editing factor (SLO2) 0.09 Archaeplastida
Gb_02603 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
LOC_Os04g35610.1 No alias RNA editing factor (SLO2) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 728 821
IPR002885 Pentatricopeptide_repeat 501 547
IPR002885 Pentatricopeptide_repeat 258 308
IPR002885 Pentatricopeptide_repeat 158 205
IPR002885 Pentatricopeptide_repeat 392 440
IPR002885 Pentatricopeptide_repeat 129 157
IPR002885 Pentatricopeptide_repeat 575 598
IPR002885 Pentatricopeptide_repeat 101 127
IPR002885 Pentatricopeptide_repeat 336 362
IPR002885 Pentatricopeptide_repeat 474 499
No external refs found!