MA_495935g0010

Description : DEAD-box ATP-dependent RNA helicase 47, mitochondrial OS=Arabidopsis thaliana (sp|q8w4e1|rh47_arath : 514.0)

Gene families : OG0006412 (Archaeplastida) Phylogenetic Tree(s): OG0006412_tree ,
OG_05_0007936 (LandPlants) Phylogenetic Tree(s): OG_05_0007936_tree ,
OG_06_0010076 (SeedPlants) Phylogenetic Tree(s): OG_06_0010076_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_495935g0010
Cluster	HCCA: Cluster_341

Target	Alias	Description	ECC score	Gene Family Method
AT1G12770	ISE1, EMB1586	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
Cpa\|evm.model.tig00021346.2	No alias	DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa...	0.01	Archaeplastida
LOC_Os02g42406.1	No alias	DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa...	0.05	Archaeplastida
LOC_Os03g12000.1	No alias	DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa...	0.03	Archaeplastida
Mp2g16530.1	No alias	DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	533	638
IPR011545	DEAD/DEAH_box_helicase_dom	275	467

External Links

No external refs found!