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  5. AT5G54090

AT5G54090


Description : DNA mismatch repair protein MutS, type 2


Gene families : OG0002173 (Archaeplastida) Phylogenetic Tree(s): OG0002173_tree ,
OG_05_0008521 (LandPlants) Phylogenetic Tree(s): OG_05_0008521_tree ,
OG_06_0009565 (SeedPlants) Phylogenetic Tree(s): OG_06_0009565_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G54090


Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding ISS Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006298 mismatch repair ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
CC GO:0000815 ESCRT III complex IEP Neighborhood
MF GO:0001716 L-amino-acid oxidase activity IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004040 amidase activity IEP Neighborhood
MF GO:0004630 phospholipase D activity IEP Neighborhood
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP Neighborhood
MF GO:0005388 calcium-transporting ATPase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005665 RNA polymerase II, core complex IEP Neighborhood
CC GO:0005677 chromatin silencing complex IEP Neighborhood
CC GO:0005798 Golgi-associated vesicle IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006482 protein demethylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006513 protein monoubiquitination IEP Neighborhood
BP GO:0006596 polyamine biosynthetic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0006986 response to unfolded protein IEP Neighborhood
BP GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008143 poly(A) binding IEP Neighborhood
BP GO:0008214 protein dealkylation IEP Neighborhood
MF GO:0008734 L-aspartate oxidase activity IEP Neighborhood
MF GO:0008792 arginine decarboxylase activity IEP Neighborhood
MF GO:0008864 formyltetrahydrofolate deformylase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009395 phospholipid catabolic process IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
BP GO:0009414 response to water deprivation IEP Neighborhood
BP GO:0009415 response to water IEP Neighborhood
BP GO:0009435 NAD biosynthetic process IEP Neighborhood
BP GO:0009445 putrescine metabolic process IEP Neighborhood
BP GO:0009446 putrescine biosynthetic process IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009534 chloroplast thylakoid IEP Neighborhood
BP GO:0009608 response to symbiont IEP Neighborhood
BP GO:0009610 response to symbiotic fungus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009668 plastid membrane organization IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009720 detection of hormone stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009726 detection of endogenous stimulus IEP Neighborhood
BP GO:0009729 detection of brassinosteroid stimulus IEP Neighborhood
BP GO:0009738 abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009755 hormone-mediated signaling pathway IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0009902 chloroplast relocation IEP Neighborhood
BP GO:0010027 thylakoid membrane organization IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010205 photoinhibition IEP Neighborhood
BP GO:0010206 photosystem II repair IEP Neighborhood
BP GO:0010381 peroxisome-chloroplast membrane tethering IEP Neighborhood
BP GO:0010398 xylogalacturonan metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
MF GO:0015922 aspartate oxidase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
CC GO:0016514 SWI/SNF complex IEP Neighborhood
BP GO:0016577 histone demethylation IEP Neighborhood
CC GO:0016591 RNA polymerase II, holoenzyme IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
BP GO:0016926 protein desumoylation IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
BP GO:0017000 antibiotic biosynthetic process IEP Neighborhood
BP GO:0017001 antibiotic catabolic process IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019374 galactolipid metabolic process IEP Neighborhood
BP GO:0019375 galactolipid biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019674 NAD metabolic process IEP Neighborhood
BP GO:0019750 chloroplast localization IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
BP GO:0030091 protein repair IEP Neighborhood
CC GO:0030133 transport vesicle IEP Neighborhood
CC GO:0030135 coated vesicle IEP Neighborhood
CC GO:0030136 clathrin-coated vesicle IEP Neighborhood
CC GO:0030140 trans-Golgi network transport vesicle IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030838 positive regulation of actin filament polymerization IEP Neighborhood
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP Neighborhood
BP GO:0031056 regulation of histone modification IEP Neighborhood
BP GO:0031058 positive regulation of histone modification IEP Neighborhood
BP GO:0031060 regulation of histone methylation IEP Neighborhood
BP GO:0031062 positive regulation of histone methylation IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
BP GO:0031347 regulation of defense response IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
BP GO:0031401 positive regulation of protein modification process IEP Neighborhood
BP GO:0031425 chloroplast RNA processing IEP Neighborhood
MF GO:0031490 chromatin DNA binding IEP Neighborhood
BP GO:0031497 chromatin assembly IEP Neighborhood
BP GO:0031507 heterochromatin assembly IEP Neighborhood
CC GO:0031519 PcG protein complex IEP Neighborhood
CC GO:0031976 plastid thylakoid IEP Neighborhood
CC GO:0031977 thylakoid lumen IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032273 positive regulation of protein polymerization IEP Neighborhood
BP GO:0032386 regulation of intracellular transport IEP Neighborhood
BP GO:0032388 positive regulation of intracellular transport IEP Neighborhood
MF GO:0032451 demethylase activity IEP Neighborhood
MF GO:0032452 histone demethylase activity IEP Neighborhood
MF GO:0032454 histone demethylase activity (H3-K9 specific) IEP Neighborhood
BP GO:0032776 DNA methylation on cytosine IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0032922 circadian regulation of gene expression IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033157 regulation of intracellular protein transport IEP Neighborhood
BP GO:0033169 histone H3-K9 demethylation IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0034308 primary alcohol metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034976 response to endoplasmic reticulum stress IEP Neighborhood
MF GO:0035064 methylated histone binding IEP Neighborhood
MF GO:0035252 UDP-xylosyltransferase activity IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0042285 xylosyltransferase activity IEP Neighborhood
BP GO:0042439 ethanolamine-containing compound metabolic process IEP Neighborhood
BP GO:0042548 regulation of photosynthesis, light reaction IEP Neighborhood
BP GO:0042631 cellular response to water deprivation IEP Neighborhood
BP GO:0042743 hydrogen peroxide metabolic process IEP Neighborhood
BP GO:0042744 hydrogen peroxide catabolic process IEP Neighborhood
BP GO:0042793 plastid transcription IEP Neighborhood
BP GO:0043155 negative regulation of photosynthesis, light reaction IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044242 cellular lipid catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045010 actin nucleation IEP Neighborhood
BP GO:0045596 negative regulation of cell differentiation IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0046653 tetrahydrofolate metabolic process IEP Neighborhood
BP GO:0046822 regulation of nucleocytoplasmic transport IEP Neighborhood
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP Neighborhood
BP GO:0046825 regulation of protein export from nucleus IEP Neighborhood
BP GO:0046827 positive regulation of protein export from nucleus IEP Neighborhood
MF GO:0047412 N-(long-chain-acyl)ethanolamine deacylase activity IEP Neighborhood
CC GO:0048471 perinuclear region of cytoplasm IEP Neighborhood
BP GO:0048497 maintenance of floral organ identity IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0048585 negative regulation of response to stimulus IEP Neighborhood
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP Neighborhood
BP GO:0050665 hydrogen peroxide biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051050 positive regulation of transport IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
BP GO:0051222 positive regulation of protein transport IEP Neighborhood
BP GO:0051223 regulation of protein transport IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0051495 positive regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051570 regulation of histone H3-K9 methylation IEP Neighborhood
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051644 plastid localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051656 establishment of organelle localization IEP Neighborhood
BP GO:0051667 establishment of plastid localization IEP Neighborhood
BP GO:0051707 response to other organism IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0060341 regulation of cellular localization IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070076 histone lysine demethylation IEP Neighborhood
BP GO:0070201 regulation of establishment of protein localization IEP Neighborhood
BP GO:0070291 N-acylethanolamine metabolic process IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
MF GO:0070717 poly-purine tract binding IEP Neighborhood
BP GO:0070828 heterochromatin organization IEP Neighborhood
BP GO:0070887 cellular response to chemical stimulus IEP Neighborhood
BP GO:0070919 production of siRNA involved in chromatin silencing by small RNA IEP Neighborhood
BP GO:0070988 demethylation IEP Neighborhood
BP GO:0071229 cellular response to acid chemical IEP Neighborhood
BP GO:0071365 cellular response to auxin stimulus IEP Neighborhood
BP GO:0071462 cellular response to water stimulus IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0080134 regulation of response to stress IEP Neighborhood
BP GO:0080188 RNA-directed DNA methylation IEP Neighborhood
BP GO:0090087 regulation of peptide transport IEP Neighborhood
BP GO:0090316 positive regulation of intracellular protein transport IEP Neighborhood
BP GO:0090351 seedling development IEP Neighborhood
CC GO:0090568 nuclear transcriptional repressor complex IEP Neighborhood
BP GO:0090700 maintenance of plant organ identity IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
MF GO:0140030 modification-dependent protein binding IEP Neighborhood
MF GO:0140034 methylation-dependent protein binding IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP Neighborhood
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP Neighborhood
BP GO:1900150 regulation of defense response to fungus IEP Neighborhood
BP GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1902347 response to strigolactone IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1903409 reactive oxygen species biosynthetic process IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903827 regulation of cellular protein localization IEP Neighborhood
BP GO:1903829 positive regulation of cellular protein localization IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
BP GO:1904951 positive regulation of establishment of protein localization IEP Neighborhood
BP GO:1905156 negative regulation of photosynthesis IEP Neighborhood
BP GO:1905269 positive regulation of chromatin organization IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
BP GO:2000028 regulation of photoperiodism, flowering IEP Neighborhood
BP GO:2000034 regulation of seed maturation IEP Neighborhood
BP GO:2000072 regulation of defense response to fungus, incompatible interaction IEP Neighborhood
BP GO:2000693 positive regulation of seed maturation IEP Neighborhood
BP GO:2001252 positive regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 437 618
No external refs found!