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  5. MA_650673g0010

MA_650673g0010


Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 815.0)


Gene families : OG0023133 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0014006 (LandPlants) Phylogenetic Tree(s): OG_05_0014006_tree ,
OG_06_0012974 (SeedPlants) Phylogenetic Tree(s): OG_06_0012974_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_650673g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Gb_06975 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 399 425
IPR002885 Pentatricopeptide_repeat 697 726
IPR002885 Pentatricopeptide_repeat 164 191
IPR002885 Pentatricopeptide_repeat 632 656
IPR002885 Pentatricopeptide_repeat 531 555
IPR002885 Pentatricopeptide_repeat 135 160
IPR002885 Pentatricopeptide_repeat 456 503
IPR002885 Pentatricopeptide_repeat 557 603
IPR002885 Pentatricopeptide_repeat 192 238
IPR002885 Pentatricopeptide_repeat 324 372
IPR032867 DYW_dom 730 854
IPR002885 Pentatricopeptide_repeat 293 321
No external refs found!