1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G62460

AT5G62460


Description : RING/FYVE/PHD zinc finger superfamily protein


Gene families : OG0000436 (Archaeplastida) Phylogenetic Tree(s): OG0000436_tree ,
OG_05_0000506 (LandPlants) Phylogenetic Tree(s): OG_05_0000506_tree ,
OG_06_0040812 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G62460
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261170 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00105p00126340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_37740 No alias RING-v-class E3 ligase 0.02 Archaeplastida
LOC_Os02g36740.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida
LOC_Os08g33860.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida
LOC_Os11g38800.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
MA_10427291g0010 No alias RING-v-class E3 ligase 0.04 Archaeplastida
Mp8g15410.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Solyc01g020190.2.1 No alias Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc02g091230.4.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Solyc03g116030.4.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
CC GO:0000781 chromosome, telomeric region IEP Neighborhood
CC GO:0000784 nuclear chromosome, telomeric region IEP Neighborhood
CC GO:0000813 ESCRT I complex IEP Neighborhood
CC GO:0000815 ESCRT III complex IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
BP GO:0002679 respiratory burst involved in defense response IEP Neighborhood
BP GO:0002682 regulation of immune system process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004708 MAP kinase kinase activity IEP Neighborhood
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP Neighborhood
MF GO:0004713 protein tyrosine kinase activity IEP Neighborhood
MF GO:0005046 KDEL sequence binding IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005768 endosome IEP Neighborhood
CC GO:0005770 late endosome IEP Neighborhood
CC GO:0005771 multivesicular body IEP Neighborhood
CC GO:0005794 Golgi apparatus IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
CC GO:0005801 cis-Golgi network IEP Neighborhood
CC GO:0005802 trans-Golgi network IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
BP GO:0006972 hyperosmotic response IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
BP GO:0009266 response to temperature stimulus IEP Neighborhood
BP GO:0009403 toxin biosynthetic process IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
BP GO:0009414 response to water deprivation IEP Neighborhood
BP GO:0009415 response to water IEP Neighborhood
BP GO:0009611 response to wounding IEP Neighborhood
BP GO:0009620 response to fungus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009636 response to toxic substance IEP Neighborhood
BP GO:0009642 response to light intensity IEP Neighborhood
BP GO:0009644 response to high light intensity IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009692 ethylene metabolic process IEP Neighborhood
BP GO:0009693 ethylene biosynthetic process IEP Neighborhood
BP GO:0009700 indole phytoalexin biosynthetic process IEP Neighborhood
BP GO:0009723 response to ethylene IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009738 abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009753 response to jasmonic acid IEP Neighborhood
BP GO:0009755 hormone-mediated signaling pathway IEP Neighborhood
BP GO:0009816 defense response to bacterium, incompatible interaction IEP Neighborhood
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway IEP Neighborhood
BP GO:0009863 salicylic acid mediated signaling pathway IEP Neighborhood
BP GO:0009867 jasmonic acid mediated signaling pathway IEP Neighborhood
BP GO:0009873 ethylene-activated signaling pathway IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010107 potassium ion import IEP Neighborhood
BP GO:0010117 photoprotection IEP Neighborhood
BP GO:0010120 camalexin biosynthetic process IEP Neighborhood
BP GO:0010200 response to chitin IEP Neighborhood
BP GO:0010243 response to organonitrogen compound IEP Neighborhood
BP GO:0010359 regulation of anion channel activity IEP Neighborhood
BP GO:0010363 regulation of plant-type hypersensitive response IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
BP GO:0010941 regulation of cell death IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016233 telomere capping IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0019187 beta-1,4-mannosyltransferase activity IEP Neighborhood
MF GO:0019209 kinase activator activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0022898 regulation of transmembrane transporter activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030173 integral component of Golgi membrane IEP Neighborhood
MF GO:0030295 protein kinase activator activity IEP Neighborhood
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031228 intrinsic component of Golgi membrane IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031347 regulation of defense response IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
BP GO:0032409 regulation of transporter activity IEP Neighborhood
BP GO:0032412 regulation of ion transmembrane transporter activity IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033037 polysaccharide localization IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
MF GO:0033293 monocarboxylic acid binding IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0035264 multicellular organism growth IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0036452 ESCRT complex IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
BP GO:0042446 hormone biosynthetic process IEP Neighborhood
BP GO:0042493 response to drug IEP Neighborhood
BP GO:0042538 hyperosmotic salinity response IEP Neighborhood
BP GO:0042542 response to hydrogen peroxide IEP Neighborhood
MF GO:0042562 hormone binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043067 regulation of programmed cell death IEP Neighborhood
BP GO:0043069 negative regulation of programmed cell death IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043449 cellular alkene metabolic process IEP Neighborhood
BP GO:0043450 alkene biosynthetic process IEP Neighborhood
BP GO:0043455 regulation of secondary metabolic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
BP GO:0045088 regulation of innate immune response IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
BP GO:0045730 respiratory burst IEP Neighborhood
BP GO:0046217 indole phytoalexin metabolic process IEP Neighborhood
BP GO:0046777 protein autophosphorylation IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0048585 negative regulation of response to stimulus IEP Neighborhood
BP GO:0050776 regulation of immune response IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
MF GO:0051753 mannan synthase activity IEP Neighborhood
BP GO:0052031 modulation by symbiont of host defense response IEP Neighborhood
BP GO:0052173 response to defenses of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052200 response to host defenses IEP Neighborhood
BP GO:0052255 modulation by organism of defense response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052314 phytoalexin metabolic process IEP Neighborhood
BP GO:0052315 phytoalexin biosynthetic process IEP Neighborhood
BP GO:0052317 camalexin metabolic process IEP Neighborhood
BP GO:0052542 defense response by callose deposition IEP Neighborhood
BP GO:0052545 callose localization IEP Neighborhood
BP GO:0052552 modulation by organism of immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052553 modulation by symbiont of host immune response IEP Neighborhood
BP GO:0052555 positive regulation by organism of immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052556 positive regulation by symbiont of host immune response IEP Neighborhood
BP GO:0052558 induction by organism of immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052559 induction by symbiont of host immune response IEP Neighborhood
BP GO:0052564 response to immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052572 response to host immune response IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0060548 negative regulation of cell death IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071214 cellular response to abiotic stimulus IEP Neighborhood
BP GO:0071470 cellular response to osmotic stress IEP Neighborhood
BP GO:0071472 cellular response to salt stress IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0075136 response to host IEP Neighborhood
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0080037 negative regulation of cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080134 regulation of response to stress IEP Neighborhood
BP GO:0080135 regulation of cellular response to stress IEP Neighborhood
BP GO:0080185 effector dependent induction by symbiont of host immune response IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
BP GO:0104004 cellular response to environmental stimulus IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1900673 olefin metabolic process IEP Neighborhood
BP GO:1900674 olefin biosynthetic process IEP Neighborhood
MF GO:1901149 salicylic acid binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR022143 DUF3675 129 248
IPR011016 Znf_RING-CH 78 123
No external refs found!