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  5. MA_779502g0010

MA_779502g0010


Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana (sp|q84tg3|pub23_arath : 227.0)


Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0000440 (SeedPlants) Phylogenetic Tree(s): OG_06_0000440_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_779502g0010
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00161650 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT3G02840 No alias ARM repeat superfamily protein 0.03 Archaeplastida
AT3G11840 PUB24 plant U-box 24 0.02 Archaeplastida
AT3G52450 PUB22 plant U-box 22 0.04 Archaeplastida
AT5G37490 No alias ARM repeat superfamily protein 0.04 Archaeplastida
AT5G64660 CMPG2, ATCMPG2 CYS, MET, PRO, and GLY protein 2 0.03 Archaeplastida
Cre08.g383550 No alias No description available 0.01 Archaeplastida
GSVIVT01011139001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01011140001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01011616001 No alias U-box domain-containing protein 20 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01031720001 No alias U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_02627 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.06 Archaeplastida
Gb_02629 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.04 Archaeplastida
Gb_13090 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.07 Archaeplastida
Gb_16227 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
Gb_16228 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.05 Archaeplastida
Gb_17119 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.06 Archaeplastida
Gb_19502 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.04 Archaeplastida
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 Archaeplastida
Gb_29851 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os02g50460.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os03g13740.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os04g34030.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os04g34140.1 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
LOC_Os04g49970.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os08g04470.1 No alias U-box domain-containing protein 8 OS=Arabidopsis... 0.02 Archaeplastida
MA_3784951g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_415344g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
MA_481299g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
MA_61761g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
MA_84154g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.05 Archaeplastida
MA_8837995g0010 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.03 Archaeplastida
Smo104879 No alias U-box domain-containing protein 25 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc01g005160.4.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g007000.4.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g007020.4.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g007030.3.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Solyc01g007050.3.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g009330.1.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Solyc04g008100.3.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.05 Archaeplastida
Solyc04g077610.4.1 No alias U-box domain-containing protein 30 OS=Arabidopsis... 0.02 Archaeplastida
Solyc11g006030.1.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.02 Archaeplastida
Solyc11g068940.1.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e006484_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e007108_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e007109_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e014752_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e014766_P001 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Zm00001e014779_P001 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e022698_P001 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006771 riboflavin metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009231 riboflavin biosynthetic process IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042726 flavin-containing compound metabolic process IEP Neighborhood
BP GO:0042727 flavin-containing compound biosynthetic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!