AT5G66520

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G66520
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00072270	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
GSVIVT01031251001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.03	Archaeplastida
Gb_03345	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
LOC_Os07g09370.1	No alias	RNA editing factor (CRR28)	0.07	Archaeplastida
LOC_Os07g39910.1	No alias	Pentatricopeptide repeat-containing protein At1g25360...	0.03	Archaeplastida
MA_10426444g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
MA_10430171g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
MA_110g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
MA_177230g0010	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.03	Archaeplastida
MA_20746g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_653417g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_81105g0010	No alias	RNA editing factor (OTP82)	0.05	Archaeplastida
MA_87646g0010	No alias	RNA editing factor (MEF13)	0.03	Archaeplastida
Smo173093	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Smo424099	No alias	Pentatricopeptide repeat-containing protein At4g31850,...	0.02	Archaeplastida
Smo90123	No alias	Pentatricopeptide repeat-containing protein At3g22690...	0.02	Archaeplastida
Solyc01g095690.2.1	No alias	Pentatricopeptide repeat-containing protein At4g01030,...	0.03	Archaeplastida
Solyc02g081900.4.1	No alias	RNA editing factor (OTP84)	0.05	Archaeplastida
Solyc04g076800.3.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
Solyc08g013850.1.1	No alias	RNA editing factor (CRR21)	0.05	Archaeplastida
Solyc11g017370.3.1	No alias	RNA editing factor (AEF1)	0.11	Archaeplastida
Zm00001e021457_P001	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Zm00001e022253_P001	No alias	Pentatricopeptide repeat-containing protein At1g59720,...	0.04	Archaeplastida
Zm00001e023498_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	ND	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006090	pyruvate metabolic process	IEP	Neighborhood
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Neighborhood
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006644	phospholipid metabolic process	IEP	Neighborhood
BP	GO:0006655	phosphatidylglycerol biosynthetic process	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006721	terpenoid metabolic process	IEP	Neighborhood
BP	GO:0006775	fat-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0008654	phospholipid biosynthetic process	IEP	Neighborhood
MF	GO:0008935	1,4-dihydroxy-2-naphthoyl-CoA synthase activity	IEP	Neighborhood
BP	GO:0009051	pentose-phosphate shunt, oxidative branch	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009532	plastid stroma	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
CC	GO:0009544	chloroplast ATP synthase complex	IEP	Neighborhood
CC	GO:0009570	chloroplast stroma	IEP	Neighborhood
BP	GO:0009637	response to blue light	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009668	plastid membrane organization	IEP	Neighborhood
BP	GO:0009765	photosynthesis, light harvesting	IEP	Neighborhood
BP	GO:0009767	photosynthetic electron transport chain	IEP	Neighborhood
BP	GO:0009773	photosynthetic electron transport in photosystem I	IEP	Neighborhood
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0009965	leaf morphogenesis	IEP	Neighborhood
MF	GO:0009975	cyclase activity	IEP	Neighborhood
BP	GO:0010027	thylakoid membrane organization	IEP	Neighborhood
BP	GO:0010103	stomatal complex morphogenesis	IEP	Neighborhood
BP	GO:0010155	regulation of proton transport	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
BP	GO:0016108	tetraterpenoid metabolic process	IEP	Neighborhood
BP	GO:0016109	tetraterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016114	terpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016116	carotenoid metabolic process	IEP	Neighborhood
BP	GO:0016117	carotenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016119	carotene metabolic process	IEP	Neighborhood
BP	GO:0016120	carotene biosynthetic process	IEP	Neighborhood
BP	GO:0016122	xanthophyll metabolic process	IEP	Neighborhood
BP	GO:0016123	xanthophyll biosynthetic process	IEP	Neighborhood
MF	GO:0016833	oxo-acid-lyase activity	IEP	Neighborhood
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Neighborhood
MF	GO:0016987	sigma factor activity	IEP	Neighborhood
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	Neighborhood
BP	GO:0019637	organophosphate metabolic process	IEP	Neighborhood
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0022900	electron transport chain	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0042214	terpene metabolic process	IEP	Neighborhood
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042371	vitamin K biosynthetic process	IEP	Neighborhood
BP	GO:0042373	vitamin K metabolic process	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044434	chloroplast part	IEP	Neighborhood
CC	GO:0044435	plastid part	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	Neighborhood
MF	GO:0045435	lycopene epsilon cyclase activity	IEP	Neighborhood
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0046148	pigment biosynthetic process	IEP	Neighborhood
BP	GO:0046246	terpene biosynthetic process	IEP	Neighborhood
BP	GO:0046471	phosphatidylglycerol metabolic process	IEP	Neighborhood
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0061024	membrane organization	IEP	Neighborhood
BP	GO:0071478	cellular response to radiation	IEP	Neighborhood
BP	GO:0071482	cellular response to light stimulus	IEP	Neighborhood
BP	GO:0071483	cellular response to blue light	IEP	Neighborhood
BP	GO:0090351	seedling development	IEP	Neighborhood
BP	GO:0090407	organophosphate biosynthetic process	IEP	Neighborhood
BP	GO:0090626	plant epidermis morphogenesis	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	Neighborhood
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1904062	regulation of cation transmembrane transport	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	210	257
IPR002885	Pentatricopeptide_repeat	312	358
IPR032867	DYW_dom	485	610
IPR002885	Pentatricopeptide_repeat	178	207
IPR002885	Pentatricopeptide_repeat	82	108
IPR002885	Pentatricopeptide_repeat	386	411
IPR002885	Pentatricopeptide_repeat	153	176

External Links

No external refs found!

AT5G66520

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation