ATCG01050 (NDHD)

Aliases : NDHD

Description : NADH-Ubiquinone/plastoquinone (complex I) protein

Gene families : OG0001744 (Archaeplastida) Phylogenetic Tree(s): OG0001744_tree ,
OG_05_0005155 (LandPlants) Phylogenetic Tree(s): OG_05_0005155_tree ,
OG_06_0005637 (SeedPlants) Phylogenetic Tree(s): OG_06_0005637_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG01050
Cluster	HCCA: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01004976001	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.07	Archaeplastida
Gb_07659	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Brassica...	0.04	Archaeplastida
LOC_Os06g46435.1	No alias	component NdhD of NDH membrane subcomplex M	0.52	Archaeplastida
LOC_Os07g22504.1	No alias	component NdhD of NDH membrane subcomplex M	0.13	Archaeplastida
LOC_Os12g34094.1	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Triticum...	0.07	Archaeplastida
Mp5g13050.1	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.12	Archaeplastida
Mp8g02440.1	No alias	no hits & (original description: none)	0.11	Archaeplastida
Pp3c2_30660V3.1	No alias	NADH dehydrogenase subunit 4	0.02	Archaeplastida
Smo137786	No alias	Photosynthesis.photophosphorylation.chlororespiration.NAD...	0.21	Archaeplastida
Solyc00g013180.1.1	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Brassica...	0.05	Archaeplastida
Solyc00g500171.1.1	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis...	0.06	Archaeplastida
Solyc00g500172.1.1	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Brassica...	0.06	Archaeplastida
Solyc00g500187.1.1	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis...	0.03	Archaeplastida
Solyc00g500188.1.1	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis...	0.06	Archaeplastida
Solyc00g500189.1.1	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Brassica...	0.06	Archaeplastida
Solyc00g500251.1.1	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis...	0.03	Archaeplastida
Solyc00g500252.1.1	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis...	0.06	Archaeplastida
Solyc00g500253.1.1	No alias	NADH-ubiquinone oxidoreductase chain 4 OS=Brassica...	0.06	Archaeplastida
Solyc01g065585.1.1	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.52	Archaeplastida
Solyc01g065610.1.1	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.55	Archaeplastida
Solyc01g065620.1.1	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.19	Archaeplastida
Solyc01g065640.3.1	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.47	Archaeplastida
Solyc02g011750.1.1	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.52	Archaeplastida
Solyc10g047420.3.1	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.41	Archaeplastida
Solyc11g021213.1.1	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.52	Archaeplastida
Solyc11g021215.1.1	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.5	Archaeplastida
Solyc11g044600.2.1	No alias	no hits & (original description: none)	0.16	Archaeplastida
Solyc11g044647.1.1	No alias	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription, elongation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	RCA	Interproscan
BP	GO:0015980	energy derivation by oxidation of organic compounds	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016143	S-glycoside metabolic process	None	Extended
BP	GO:0016144	S-glycoside biosynthetic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	TAS	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0019757	glycosinolate metabolic process	None	Extended
BP	GO:0019758	glycosinolate biosynthetic process	None	Extended
BP	GO:0019760	glucosinolate metabolic process	None	Extended
BP	GO:0019761	glucosinolate biosynthetic process	RCA	Interproscan
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0044550	secondary metabolite biosynthetic process	None	Extended
BP	GO:0045333	cellular respiration	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055114	oxidation-reduction process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901657	glycosyl compound metabolic process	None	Extended
BP	GO:1901659	glycosyl compound biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000311	plastid large ribosomal subunit	IEP	Neighborhood
CC	GO:0000312	plastid small ribosomal subunit	IEP	Neighborhood
CC	GO:0000314	organellar small ribosomal subunit	IEP	Neighborhood
CC	GO:0000315	organellar large ribosomal subunit	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0003954	NADH dehydrogenase activity	IEP	Neighborhood
MF	GO:0003959	NADPH dehydrogenase activity	IEP	Neighborhood
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
BP	GO:0006119	oxidative phosphorylation	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0006175	dATP biosynthetic process	IEP	Neighborhood
BP	GO:0006176	dATP biosynthetic process from ADP	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006730	one-carbon metabolic process	IEP	Neighborhood
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Neighborhood
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Neighborhood
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009151	purine deoxyribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009153	purine deoxyribonucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Neighborhood
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Neighborhood
BP	GO:0009200	deoxyribonucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009202	deoxyribonucleoside triphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009215	purine deoxyribonucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009216	purine deoxyribonucleoside triphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009265	2'-deoxyribonucleotide biosynthetic process	IEP	Neighborhood
CC	GO:0009295	nucleoid	IEP	Neighborhood
CC	GO:0009329	acetate CoA-transferase complex	IEP	Neighborhood
CC	GO:0009368	endopeptidase Clp complex	IEP	Neighborhood
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	Neighborhood
CC	GO:0009512	cytochrome b6f complex	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009522	photosystem I	IEP	Neighborhood
CC	GO:0009523	photosystem II	IEP	Neighborhood
CC	GO:0009526	plastid envelope	IEP	Neighborhood
CC	GO:0009532	plastid stroma	IEP	Neighborhood
CC	GO:0009533	chloroplast stromal thylakoid	IEP	Neighborhood
CC	GO:0009534	chloroplast thylakoid	IEP	Neighborhood
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Neighborhood
CC	GO:0009538	photosystem I reaction center	IEP	Neighborhood
CC	GO:0009539	photosystem II reaction center	IEP	Neighborhood
CC	GO:0009544	chloroplast ATP synthase complex	IEP	Neighborhood
CC	GO:0009570	chloroplast stroma	IEP	Neighborhood
CC	GO:0009579	thylakoid	IEP	Neighborhood
BP	GO:0009617	response to bacterium	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
BP	GO:0009765	photosynthesis, light harvesting	IEP	Neighborhood
BP	GO:0009767	photosynthetic electron transport chain	IEP	Neighborhood
BP	GO:0009768	photosynthesis, light harvesting in photosystem I	IEP	Neighborhood
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	Neighborhood
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	Neighborhood
BP	GO:0009773	photosynthetic electron transport in photosystem I	IEP	Neighborhood
BP	GO:0009832	plant-type cell wall biogenesis	IEP	Neighborhood
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IEP	Neighborhood
CC	GO:0009941	chloroplast envelope	IEP	Neighborhood
BP	GO:0009970	cellular response to sulfate starvation	IEP	Neighborhood
BP	GO:0010207	photosystem II assembly	IEP	Neighborhood
CC	GO:0010287	plastoglobule	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015252	proton channel activity	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
CC	GO:0015935	small ribosomal subunit	IEP	Neighborhood
BP	GO:0015977	carbon fixation	IEP	Neighborhood
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Neighborhood
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016168	chlorophyll binding	IEP	Neighborhood
MF	GO:0016421	CoA carboxylase activity	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	Neighborhood
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	Neighborhood
BP	GO:0017014	protein nitrosylation	IEP	Neighborhood
BP	GO:0018119	peptidyl-cysteine S-nitrosylation	IEP	Neighborhood
BP	GO:0018198	peptidyl-cysteine modification	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	Neighborhood
MF	GO:0019829	cation-transporting ATPase activity	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0022900	electron transport chain	IEP	Neighborhood
CC	GO:0030095	chloroplast photosystem II	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
CC	GO:0031967	organelle envelope	IEP	Neighborhood
CC	GO:0031975	envelope	IEP	Neighborhood
CC	GO:0031976	plastid thylakoid	IEP	Neighborhood
CC	GO:0031984	organelle subcompartment	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
CC	GO:0034357	photosynthetic membrane	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0036442	proton-exporting ATPase activity	IEP	Neighborhood
BP	GO:0042180	cellular ketone metabolic process	IEP	Neighborhood
MF	GO:0042625	ATPase coupled ion transmembrane transporter activity	IEP	Neighborhood
CC	GO:0042651	thylakoid membrane	IEP	Neighborhood
BP	GO:0042742	defense response to bacterium	IEP	Neighborhood
BP	GO:0042776	mitochondrial ATP synthesis coupled proton transport	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044434	chloroplast part	IEP	Neighborhood
CC	GO:0044435	plastid part	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Neighborhood
MF	GO:0045158	electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	IEP	Neighborhood
BP	GO:0046060	dATP metabolic process	IEP	Neighborhood
BP	GO:0046385	deoxyribose phosphate biosynthetic process	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Neighborhood
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0048564	photosystem I assembly	IEP	Neighborhood
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
CC	GO:0055035	plastid thylakoid membrane	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
CC	GO:0070069	cytochrome complex	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
BP	GO:1902600	proton transmembrane transport	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

ATCG01050 (NDHD)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation